blastn task: [no title]

Status
finished finished
Modified 2016-05-16T13:19:13Z
CPU time (s) 0.0
Size (bytes) 11484
Command blastn -num_descriptions 500 -outfmt 0 -dust no -db gsASS001Lm.aug.trna.KL.rRNA2.fna -num_alignments 250 -evalue 10.0 -task blastn
Error [none]
Output
BLASTN 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: Kluyveromyces dobzhanskii (Sep 2011)
           1 sequences; 10,741,898 total letters



Query= query

Length=886
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  gsASS001Lm                                                           801    0.0  


> gsASS001Lm
Length=10741898

 Score =  801 bits (888),  Expect = 0.0
 Identities = 708/883 (81%), Gaps = 3/883 (0%)
 Strand=Plus/Plus

Query  2         CCTCATAACGGCACAAAGACAGAAATCCCAACTTCCCTTGAAGAATTGTTGAAACCAAGC  61
                 |||||||| || || || || |||||||||||    || || ||||||||||||||||| 
Sbjct  10150944  CCTCATAATGGTACCAAAACTGAAATCCCAACAAGTCTCGATGAATTGTTGAAACCAAGT  10151003

Query  62        GACAAGGTCCTATTGAAGAAACGTGTGTTTGCATTGCGTAGGCCAGAGGGAACCCTACCC  121
                 || || || | ||||||||| ||||||||||| |||||||| ||||| || || ||||| 
Sbjct  10151004  GATAAAGTGCAATTGAAGAAGCGTGTGTTTGCCTTGCGTAGACCAGAAGGCACTCTACCA  10151063

Query  122       CCAATCGTGACCCACAACATGGTGGACGACGCTACGGATCCCGTCTTGAACCAAATCAGA  181
                 ||||| || || ||||| |||||||| |||||||| ||||| || ||||| ||||| |||
Sbjct  10151064  CCAATTGTTACTCACAATATGGTGGAAGACGCTACTGATCCAGTTTTGAATCAAATTAGA  10151123

Query  182       CGTGTCCAATTGTTCAACAACTCGTACGATCGTGTCAAGATCATTTTCCATCCAGAGTTC  241
                 ||||| ||||||||||||||||| || || || || |||||||||||||| || | ||||
Sbjct  10151124  CGTGTTCAATTGTTCAACAACTCTTATGACCGGGTGAAGATCATTTTCCACCCCGCGTTC  10151183

Query  242       TTGAACGCCAATAACCCAATCTTATCTCTAGATTACGACGAGTTCGTCAGAGGTTGCCAT  301
                 |||||||| || || ||||||||||| || ||||| || || || || |||||||| |||
Sbjct  10151184  TTGAACGCAAACAATCCAATCTTATCCCTGGATTATGATGAATTTGTTAGAGGTTGTCAT  10151243

Query  302       TTGGGTGTGTTCCCTTCGTATTACGAGCCATGGGGTTACACCCCAGCAGAGTGTACCGTC  361
                 || ||||||||||| || || || ||||| |||||||| || ||||| || || || || 
Sbjct  10151244  TTAGGTGTGTTCCCATCTTACTATGAGCCTTGGGGTTATACACCAGCTGAATGCACAGTT  10151303

Query  362       ATGGGTATCCCATCCATCACAACCAACTTGTCCGGTTTTGGTGCATACATGGAGGATTTG  421
                 ||||||||||| || || || || ||||||||||| |||||||| || ||||| ||  | 
Sbjct  10151304  ATGGGTATCCCCTCGATTACCACTAACTTGTCCGGGTTTGGTGCCTATATGGAAGACCTT  10151363

Query  422       ATAGAGAAGGATCAGGCTAAGGATTACGGTATCTACATCGTAGACCGTCGTTTCAAAAAC  481
                 || ||||| ||||| || ||||| ||||||||||| ||||| |||||||||||||| |||
Sbjct  10151364  ATTGAGAAAGATCAAGCAAAGGACTACGGTATCTATATCGTGGACCGTCGTTTCAAGAAC  10151423

Query  482       CCAGACGAGTCTGTCAACCAGCTTGTCGACTACATGGAGGAGTTCGTCCTCAAGACCCGT  541
                 ||  | || || ||  | ||| | || ||||||||||| || ||||| | ||| || |||
Sbjct  10151424  CCTAATGAATCCGTGGAACAGTTAGTTGACTACATGGAAGACTTCGTTCACAAAACTCGT  10151483

Query  542       AGACAAAGAATCAACCAAAGAAACAGAACTGAACGTTTATCCGATCTATTGGACTGGAGA  601
                 ||||||||||||||||||||||| |||||||||||| |||| ||  |  | || ||||||
Sbjct  10151484  AGACAAAGAATCAACCAAAGAAATAGAACTGAACGTCTATCAGACTTGCTAGATTGGAGA  10151543

Query  602       CGTATGGGTTTAGAATACGTCAAGGCTCGTCAACTTGCCTTGCGTAGAGCGTACCCAGAT  661
                 || |||||  ||||||| || |||||  | |||||||| ||||||||||| || || |||
Sbjct  10151544  CGGATGGGCCTAGAATATGTGAAGGCCAGACAACTTGCATTGCGTAGAGCTTATCCTGAT  10151603

Query  662       GAGTTCAAAGAATTGACAGGCGGAAACGAACTCGATGACTCCAACATGGATTCAATGGCA  721
                 || || ||||||||||| || || |  ||||| || || || || |||||  || | || 
Sbjct  10151604  GAATTTAAAGAATTGACCGGTGGCACTGAACTTGACGATTCGAATATGGACACACTTGCT  10151663

Query  722       GGTAAAAAACAAAAAATCAAGGTCGCAAGACCTTTGAGTGTCCCTGGCTCTCCAAAGGAC  781
                 ||    || | |||| | || || || |||||  | ||||| || || || || ||||||
Sbjct  10151664  GG---CAATCCAAAAGTTAAAGTGGCTAGACCACTAAGTGTTCCGGGGTCCCCCAAGGAC  10151720

Query  782       TCTAGAGCAAGCAGCGTTGGCGCCGTAATGATGACTCCCGGCGATTTCGGGACTCTACAA  841
                 |||||||| |||||||||||||| |||||||||||||| |||||||| || ||| |||| 
Sbjct  10151721  TCTAGAGCCAGCAGCGTTGGCGCTGTAATGATGACTCCAGGCGATTTGGGTACTTTACAG  10151780

Query  842       GACGCTAACAACGCAGATGACTATTTCCATCTTGCCATGGATG  884
                 ||||| ||||| || |||||||| ||||||||  | |||| ||
Sbjct  10151781  GACGCCAACAATGCCGATGACTACTTCCATCTCTCTATGGGTG  10151823


 Score = 31.9 bits (34),  Expect = 2.2
 Identities = 17/17 (100%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  417      ATTTGATAGAGAAGGAT  433
                |||||||||||||||||
Sbjct  1108538  ATTTGATAGAGAAGGAT  1108522


 Score = 31.9 bits (34),  Expect = 2.2
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  480      ACCCAGACGAGTCTGTCAAC  499
                |||||| |||||||||||||
Sbjct  1729022  ACCCAGGCGAGTCTGTCAAC  1729041


 Score = 31.9 bits (34),  Expect = 2.2
 Identities = 17/17 (100%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  241      CTTGAACGCCAATAACC  257
                |||||||||||||||||
Sbjct  1781692  CTTGAACGCCAATAACC  1781676


 Score = 31.9 bits (34),  Expect = 2.2
 Identities = 17/17 (100%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  721      AGGTAAAAAACAAAAAA  737
                |||||||||||||||||
Sbjct  2573856  AGGTAAAAAACAAAAAA  2573872


 Score = 31.9 bits (34),  Expect = 2.2
 Identities = 28/35 (80%), Gaps = 0/35 (0%)
 Strand=Plus/Minus

Query  652      GTACCCAGATGAGTTCAAAGAATTGACAGGCGGAA  686
                |||| || | || ||||||||||||| | ||| ||
Sbjct  4334111  GTACACAAACGAATTCAAAGAATTGAGATGCGAAA  4334077


 Score = 31.9 bits (34),  Expect = 2.2
 Identities = 20/22 (91%), Gaps = 0/22 (0%)
 Strand=Plus/Minus

Query  697      TGACTCCAACATGGATTCAATG  718
                |||| | |||||||||||||||
Sbjct  4985490  TGACCCTAACATGGATTCAATG  4985469


 Score = 31.9 bits (34),  Expect = 2.2
 Identities = 17/17 (100%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  613      AGAATACGTCAAGGCTC  629
                |||||||||||||||||
Sbjct  5341284  AGAATACGTCAAGGCTC  5341268


 Score = 31.9 bits (34),  Expect = 2.2
 Identities = 17/17 (100%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  724      TAAAAAACAAAAAATCA  740
                |||||||||||||||||
Sbjct  7464647  TAAAAAACAAAAAATCA  7464631


 Score = 30.1 bits (32),  Expect = 7.8
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  176      ATCAGACGTGTCCAATTGT  194
                ||||||| |||||||||||
Sbjct  1152422  ATCAGACCTGTCCAATTGT  1152440


 Score = 30.1 bits (32),  Expect = 7.8
 Identities = 22/26 (85%), Gaps = 0/26 (0%)
 Strand=Plus/Plus

Query  216      TCAAGATCATTTTCCATCCAGAGTTC  241
                |||||||||||  |||| |||| |||
Sbjct  1398729  TCAAGATCATTGCCCATACAGATTTC  1398754


 Score = 30.1 bits (32),  Expect = 7.8
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  447      ACGGTATCTACATCGT  462
                ||||||||||||||||
Sbjct  1898706  ACGGTATCTACATCGT  1898721


 Score = 30.1 bits (32),  Expect = 7.8
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  442      GGATTACGGTATCTACATCGT  462
                ||||||||||||| |||| ||
Sbjct  3011522  GGATTACGGTATCGACATGGT  3011542


 Score = 30.1 bits (32),  Expect = 7.8
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  69       TCCTATTGAAGAAACG  84
                ||||||||||||||||
Sbjct  4782845  TCCTATTGAAGAAACG  4782860


 Score = 30.1 bits (32),  Expect = 7.8
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  658      AGATGAGTTCAAAGAA  673
                ||||||||||||||||
Sbjct  5028480  AGATGAGTTCAAAGAA  5028495


 Score = 30.1 bits (32),  Expect = 7.8
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  726      AAAAACAAAAAATCAA  741
                ||||||||||||||||
Sbjct  5973795  AAAAACAAAAAATCAA  5973810


 Score = 30.1 bits (32),  Expect = 7.8
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  721      AGGTAAAAAACAAAAAATCAA  741
                ||||||||||| |||||| ||
Sbjct  6501710  AGGTAAAAAACGAAAAATGAA  6501730


 Score = 30.1 bits (32),  Expect = 7.8
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  725      AAAAAACAAAAAATCAAGG  743
                ||||||||||||| |||||
Sbjct  6609501  AAAAAACAAAAAAACAAGG  6609483


 Score = 30.1 bits (32),  Expect = 7.8
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  551      ATCAACCAAAGAAACA  566
                ||||||||||||||||
Sbjct  6846204  ATCAACCAAAGAAACA  6846219


 Score = 30.1 bits (32),  Expect = 7.8
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  25       AATCCCAACTTCCCTTGAA  43
                ||||||||||| |||||||
Sbjct  7300101  AATCCCAACTTTCCTTGAA  7300119


 Score = 30.1 bits (32),  Expect = 7.8
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  167      TTGAACCAAATCAGACGTGTC  187
                || |||||||||||||| |||
Sbjct  7712015  TTTAACCAAATCAGACGGGTC  7711995


 Score = 30.1 bits (32),  Expect = 7.8
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  726      AAAAACAAAAAATCAA  741
                ||||||||||||||||
Sbjct  7988398  AAAAACAAAAAATCAA  7988383


 Score = 30.1 bits (32),  Expect = 7.8
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  408      ACATGGAGGATTTGAT  423
                ||||||||||||||||
Sbjct  8114457  ACATGGAGGATTTGAT  8114442



Lambda     K      H
   0.634    0.408    0.912 

Gapped
Lambda     K      H
   0.625    0.410    0.780 

Effective search space used: 9238009920


  Database: Kluyveromyces dobzhanskii (Sep 2011)
    Posted date:  Sep 16, 2011  10:25 AM
  Number of letters in database: 10,741,898
  Number of sequences in database:  1



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2
Query
>query
CCCTCATAACGGCACAAAGACAGAAATCCCAACTTCCCTTGAAGAATTGTTGAAACCAAGCGACAAGGTCCTATTGAAGAAACGTGTGTTTGCATTGCGTAGGCCAGAGGGAACCCTACCCCCAATCGTGACCCACAACATGGTGGACGACGCTACGGATCCCGTCTTGAACCAAATCAGACGTGTCCAATTGTTCAACAACTCGTACGATCGTGTCAAGATCATTTTCCATCCAGAGTTCTTGAACGCCAATAACCCAATCTTATCTCTAGATTACGACGAGTTCGTCAGAGGTTGCCATTTGGGTGTGTTCCCTTCGTATTACGAGCCATGGGGTTACACCCCAGCAGAGTGTACCGTCATGGGTATCCCATCCATCACAACCAACTTGTCCGGTTTTGGTGCATACATGGAGGATTTGATAGAGAAGGATCAGGCTAAGGATTACGGTATCTACATCGTAGACCGTCGTTTCAAAAACCCAGACGAGTCTGTCAACCAGCTTGTCGACTACATGGAGGAGTTCGTCCTCAAGACCCGTAGACAAAGAATCAACCAAAGAAACAGAACTGAACGTTTATCCGATCTATTGGACTGGAGACGTATGGGTTTAGAATACGTCAAGGCTCGTCAACTTGCCTTGCGTAGAGCGTACCCAGATGAGTTCAAAGAATTGACAGGCGGAAACGAACTCGATGACTCCAACATGGATTCAATGGCAGGTAAAAAACAAAAAATCAAGGTCGCAAGACCTTTGAGTGTCCCTGGCTCTCCAAAGGACTCTAGAGCAAGCAGCGTTGGCGCCGTAATGATGACTCCCGGCGATTTCGGGACTCTACAAGACGCTAACAACGCAGATGACTATTTCCATCTTGCCATGGATGAC
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Adhoc 12.7 SciLifeLab tools Per Kraulis (per.kraulis@scilifelab.se)