blastn task: [no title]

Status
finished finished
Modified 2016-05-16T11:31:33Z
CPU time (s) 0.1
Size (bytes) 17509
Command blastn -num_descriptions 500 -outfmt 0 -dust no -db gsASS001Lm.aug.trna.KL.rRNA2.ffn -num_alignments 250 -evalue 10.0 -task blastn
Error [none]
Output
BLASTN 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: Kluyveromyces dobzhanskii genes (Sep 2011)
           4,995 sequences; 7,360,030 total letters



Query= query

Length=864
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  KLDOg3120                                                           1169    0.0  
  KLDOg4520                                                           31.9    1.5  
  KLDOg4000                                                           31.9    1.5  
  KLDOg3773                                                           31.9    1.5  
  KLDOg3495                                                           31.9    1.5  
  KLDOg2721                                                           31.9    1.5  
  KLDOg2550                                                           31.9    1.5  
  KLDOg2220                                                           31.9    1.5  
  KLDOg2188                                                           31.9    1.5  
  KLDOg1769                                                           31.9    1.5  
  KLDOg1733                                                           31.9    1.5  
  KLDOg4286                                                           30.1    5.1  
  KLDOg3598                                                           30.1    5.1  
  KLDOg3565                                                           30.1    5.1  
  KLDOg3077                                                           30.1    5.1  
  KLDOg2803                                                           30.1    5.1  
  KLDOg2758                                                           30.1    5.1  
  KLDOg2530                                                           30.1    5.1  
  KLDOg2457                                                           30.1    5.1  
  KLDOg2368                                                           30.1    5.1  
  KLDOg2105                                                           30.1    5.1  
  KLDOg1825                                                           30.1    5.1  
  KLDOg1570                                                           30.1    5.1  
  KLDOg1539                                                           30.1    5.1  
  KLDOg1508                                                           30.1    5.1  
  KLDOg1176                                                           30.1    5.1  
  KLDOg791                                                            30.1    5.1  
  KLDOg587                                                            30.1    5.1  
  KLDOg574                                                            30.1    5.1  
  KLDOg497                                                            30.1    5.1  
  KLDOg480                                                            30.1    5.1  
  KLDOg473                                                            30.1    5.1  
  KLDOg265                                                            30.1    5.1  
  KLDOg73                                                             30.1    5.1  


> KLDOg3120
Length=861

 Score = 1169 bits (1296),  Expect = 0.0
 Identities = 773/856 (91%), Gaps = 0/856 (0%)
 Strand=Plus/Plus

Query  6    TTACACTACCAGACAAATCGGTGCCAAGAACACCTTGGACTACAAAGTTTTCATCGAAAA  65
            ||||||  |||||||| | ||||| |||||||| ||||||||||  ||||||||||||||
Sbjct  6    TTACACAGCCAGACAAGTTGGTGCTAAGAACACTTTGGACTACAGGGTTTTCATCGAAAA  65

Query  66   GGATGGCAAGCCAGTGTCTGCCTTCCACGACATCCCATTGTACGCTGACGAAGCCAATGG  125
            |||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||| ||
Sbjct  66   GGATGGTAAGCCAGTTTCTGCTTTCCACGACATCCCATTGTACGCTGATGAGGCCAACGG  125

Query  126  CATCTTCAACATGGTTGTCGAAATCCCACGTTGGACCAACGCCAAGTTGGAAATCACCAA  185
             |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct  126  GATCTTCAACATGGTCGTTGAAATCCCACGTTGGACCAACGCCAAGTTGGAAATCACCAA  185

Query  186  GGAGGAGAAGTTGAACCCAATCATCCAAGACACCAAGAAGGGTAAGCTAAGATTTGTGAG  245
            ||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct  186  GGAGGAGAAATTGAACCCAATTATCCAGGACACCAAGAAGGGTAAGCTAAGATTTGTGAG  245

Query  246  AAACTGTTTCCCACACCACGGTTACATCCACAACTACGGTGCTTTCCCACAAACCTGGGA  305
            |||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||
Sbjct  246  AAACTGTTTCCCACACCATGGTTACATTCACAACTACGGTGCTTTCCCTCAGACCTGGGA  305

Query  306  AGACCCTAACGAGTCCCACCCAGAAACCAAGGCTGTTGGTGACAACGATCCATTGGATGT  365
            ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  306  AGACCCTAACGAGGCTCACCCAGAAACCAAGGCTGTTGGTGACAACGATCCATTGGACGT  365

Query  366  GTTGGAAATCGGTGAACAAGTCGCATACACTGGTCAAGTGAAGCAAGTCAAGGTTCTTGG  425
            ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  366  GTTGGAAATCGGTGAGCAAGTTGCATACACTGGTCAAGTGAAGCAAGTCAAGGTTCTTGG  425

Query  426  TGTGATGGCCTTGTTGGACGAAGGTGAGACCGACTGGAAGGTGATTGTGATCGACATCAA  485
            ||||||||| |||||||||||||| ||||||||||||||||||||||  |||||||||||
Sbjct  426  TGTGATGGCTTTGTTGGACGAAGGGGAGACCGACTGGAAGGTGATTGCCATCGACATCAA  485

Query  486  CGATCCATTGGCCCCAAAGTTGAACGACATTGAGGATGTCGAGAAGCACTTGCCAGGTTT  545
            ||| |||||||| || |||||||||||||| || |||||||| |||||| ||||||||||
Sbjct  486  CGACCCATTGGCTCCTAAGTTGAACGACATCGAAGATGTCGAAAAGCACCTGCCAGGTTT  545

Query  546  GCTAAGAGCCACTAACGAATGGTTCAGAATCTACAAGATTCCAGACGGTAAGCCAGAAAA  605
            | | |||||||| |||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct  546  GTTGAGAGCCACCAACGAATGGTTCAGAATCTACAAGATCCCTGACGGTAAGCCAGAGAA  605

Query  606  CCAATTTGCCTTCTCTGGTGAAGCCAAGAACAAGAAGTACGCTCTAGAAGTGATCAGGGA  665
             |||||||| ||||| ||||| |||||||||||||||||| || | ||||| ||||| ||
Sbjct  606  TCAATTTGCTTTCTCCGGTGAGGCCAAGAACAAGAAGTACACTTTGGAAGTCATCAGAGA  665

Query  666  GTGTAACGAAGCTTGGAAGAAGTTGATTTCCGGTAAGTCTGCTGACGCTAAGAAGATCGA  725
            |   |||||||| |||||||||||||| ||||| ||| || | ||||| |||||||||||
Sbjct  666  GACCAACGAAGCCTGGAAGAAGTTGATCTCCGGCAAGGCTTCCGACGCCAAGAAGATCGA  725

Query  726  TTTGACCAACACCACGTTGGTCGACACTGCCACTTACTCTGCCGAAGCTGCTGCTGCTGT  785
            ||||||||||||||| |||| ||| ||  | ||||||||||| ||||||||  |||||||
Sbjct  726  TTTGACCAACACCACTTTGGCCGAGACCCCAACTTACTCTGCTGAAGCTGCCTCTGCTGT  785

Query  786  TCCACCAGCACACGTCTTGCCAGACGAGCCAATCGACAAGTCCATTGACAAGTGGTTCTT  845
            |||| | ||  ||||||||||||||||  |||||||||||||||| ||||||||||||||
Sbjct  786  TCCAGCTGCTAACGTCTTGCCAGACGAAGCAATCGACAAGTCCATCGACAAGTGGTTCTT  845

Query  846  CATCTCCGGTTCTGCT  861
            |||||| ||||| |||
Sbjct  846  CATCTCTGGTTCCGCT  861


> KLDOg4520
Length=2742

 Score = 31.9 bits (34),  Expect = 1.5
 Identities = 20/22 (91%), Gaps = 0/22 (0%)
 Strand=Plus/Plus

Query  288   TTTCCCACAAACCTGGGAAGAC  309
             |||||||||||||||| || ||
Sbjct  1005  TTTCCCACAAACCTGGAAAAAC  1026


> KLDOg4000
Length=1581

 Score = 31.9 bits (34),  Expect = 1.5
 Identities = 26/32 (82%), Gaps = 0/32 (0%)
 Strand=Plus/Minus

Query  597  GCCAGAAAACCAATTTGCCTTCTCTGGTGAAG  628
            || ||||||||||||| ||| |   |||||||
Sbjct  376  GCGAGAAAACCAATTTCCCTGCAGAGGTGAAG  345


> KLDOg3773
Length=1794

 Score = 31.9 bits (34),  Expect = 1.5
 Identities = 22/25 (88%), Gaps = 0/25 (0%)
 Strand=Plus/Plus

Query  772  GCTGCTGCTGCTGTTCCACCAGCAC  796
            ||||||||||||||  || ||||||
Sbjct  229  GCTGCTGCTGCTGTGGCAGCAGCAC  253


> KLDOg3495
Length=1200

 Score = 31.9 bits (34),  Expect = 1.5
 Identities = 20/22 (91%), Gaps = 0/22 (0%)
 Strand=Plus/Plus

Query  342  TGGTGACAACGATCCATTGGAT  363
            ||| |||||||||||||| |||
Sbjct  222  TGGAGACAACGATCCATTCGAT  243


> KLDOg2721
Length=3369

 Score = 31.9 bits (34),  Expect = 1.5
 Identities = 20/22 (91%), Gaps = 0/22 (0%)
 Strand=Plus/Minus

Query  765  TGCCGAAGCTGCTGCTGCTGTT  786
            |||||  |||||||||||||||
Sbjct  655  TGCCGCTGCTGCTGCTGCTGTT  634


> KLDOg2550
Length=1203

 Score = 31.9 bits (34),  Expect = 1.5
 Identities = 22/25 (88%), Gaps = 0/25 (0%)
 Strand=Plus/Plus

Query  495  GGCCCCAAAGTTGAACGACATTGAG  519
            |||| ||||||  ||||||||||||
Sbjct  494  GGCCACAAAGTCTAACGACATTGAG  518


> KLDOg2220
Length=1032

 Score = 31.9 bits (34),  Expect = 1.5
 Identities = 22/25 (88%), Gaps = 0/25 (0%)
 Strand=Plus/Minus

Query  76   CCAGTGTCTGCCTTCCACGACATCC  100
            ||||||||||| | |||||||| ||
Sbjct  281  CCAGTGTCTGCGTCCCACGACAACC  257


> KLDOg2188
Length=1704

 Score = 31.9 bits (34),  Expect = 1.5
 Identities = 22/25 (88%), Gaps = 0/25 (0%)
 Strand=Plus/Minus

Query  772   GCTGCTGCTGCTGTTCCACCAGCAC  796
             ||||||||||||| | || ||||||
Sbjct  1003  GCTGCTGCTGCTGCTGCAGCAGCAC  979


 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  764   CTGCCGAAGCTGCTGCTGCTG  784
             |||| || |||||||||||||
Sbjct  1194  CTGCTGATGCTGCTGCTGCTG  1174


> KLDOg1769
Length=783

 Score = 31.9 bits (34),  Expect = 1.5
 Identities = 26/32 (82%), Gaps = 0/32 (0%)
 Strand=Plus/Minus

Query  764  CTGCCGAAGCTGCTGCTGCTGTTCCACCAGCA  795
            |||| |  ||||||||||||| | || |||||
Sbjct  291  CTGCTGTTGCTGCTGCTGCTGCTGCAGCAGCA  260


> KLDOg1733
Length=1923

 Score = 31.9 bits (34),  Expect = 1.5
 Identities = 20/22 (91%), Gaps = 0/22 (0%)
 Strand=Plus/Plus

Query  621  TGGTGAAGCCAAGAACAAGAAG  642
            || ||||||||||||||| |||
Sbjct  39   TGCTGAAGCCAAGAACAAAAAG  60


> KLDOg4286
Length=2256

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  766  GCCGAAGCTGCTGCTGCTG  784
            ||||| |||||||||||||
Sbjct  581  GCCGATGCTGCTGCTGCTG  563


> KLDOg3598
Length=459

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  766  GCCGAAGCTGCTGCTGCTG  784
            || ||||||||||||||||
Sbjct  298  GCAGAAGCTGCTGCTGCTG  316


> KLDOg3565
Length=687

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  61   GAAAAGGATGGCAAGCCAGTG  81
            ||||||  |||||||||||||
Sbjct  481  GAAAAGACTGGCAAGCCAGTG  501


> KLDOg3077
Length=915

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 22/25 (88%), Gaps = 2/25 (8%)
 Strand=Plus/Plus

Query  414  CAAGGTTCTTGGTGTGATGGCCTTG  438
            ||||||||||||| ||||  |||||
Sbjct  567  CAAGGTTCTTGGTTTGAT--CCTTG  589


> KLDOg2803
Length=1434

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  438  GTTGGACGAAGGTGAGACC  456
            |||||||||||||| ||||
Sbjct  336  GTTGGACGAAGGTGTGACC  354


> KLDOg2758
Length=1119

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  271   ATCCACAACTACGGTGCTT  289
             ||||| |||||||||||||
Sbjct  1018  ATCCATAACTACGGTGCTT  1036


> KLDOg2530
Length=678

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  727  TTGACCAACACCACGTTGG  745
            ||||||||||||| |||||
Sbjct  418  TTGACCAACACCAAGTTGG  436


> KLDOg2457
Length=1809

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 29/36 (81%), Gaps = 1/36 (2%)
 Strand=Plus/Plus

Query  764   CTGCCGAAGCTGCTGCTGCTG-TTCCACCAGCACAC  798
             |||| |  ||||||||||||| | ||||||  ||||
Sbjct  1760  CTGCTGCTGCTGCTGCTGCTGCTGCCACCACTACAC  1795


> KLDOg2368
Length=2412

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  769  GAAGCTGCTGCTGCTG  784
            ||||||||||||||||
Sbjct  934  GAAGCTGCTGCTGCTG  919


> KLDOg2105
Length=3543

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 21/24 (88%), Gaps = 0/24 (0%)
 Strand=Plus/Minus

Query  763  TCTGCCGAAGCTGCTGCTGCTGTT  786
            ||||| |  |||||||||||||||
Sbjct  676  TCTGCTGCTGCTGCTGCTGCTGTT  653


> KLDOg1825
Length=2427

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  769   GAAGCTGCTGCTGCTG  784
             ||||||||||||||||
Sbjct  2194  GAAGCTGCTGCTGCTG  2179


> KLDOg1570
Length=1818

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 25/31 (81%), Gaps = 0/31 (0%)
 Strand=Plus/Minus

Query  120   CAATGGCATCTTCAACATGGTTGTCGAAATC  150
             ||||  |||||||||||  || ||||| |||
Sbjct  1192  CAATCTCATCTTCAACAAAGTCGTCGACATC  1162


> KLDOg1539
Length=945

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  16   AGACAAATCGGTGCCAAGAAC  36
            |||||||||||||| || |||
Sbjct  298  AGACAAATCGGTGCGAACAAC  318


> KLDOg1508
Length=2262

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 21/24 (88%), Gaps = 0/24 (0%)
 Strand=Plus/Plus

Query  102   ATTGTACGCTGACGAAGCCAATGG  125
             ||||| |  |||||||||||||||
Sbjct  2129  ATTGTTCATTGACGAAGCCAATGG  2152


> KLDOg1176
Length=1644

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  281  ACGGTGCTTTCCCACAAAC  299
            |||||||||||| ||||||
Sbjct  812  ACGGTGCTTTCCAACAAAC  794


> KLDOg791
Length=570

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  715  AAGAAGATCGATTTGACCA  733
            ||||||| |||||||||||
Sbjct  166  AAGAAGAACGATTTGACCA  184


> KLDOg587
Length=5655

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  721  ATCGATTTGACCAACA  736
            ||||||||||||||||
Sbjct  520  ATCGATTTGACCAACA  535


> KLDOg574
Length=1572

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 32/41 (79%), Gaps = 1/41 (2%)
 Strand=Plus/Plus

Query  191  AGAAGTTGAACCCAATCATCCAAGACACCAAGAAGGGTAAG  231
            ||||| | |||| |||| |  ||   |||||||||||||||
Sbjct  597  AGAAGCT-AACCAAATCTTGAAATCTACCAAGAAGGGTAAG  636


> KLDOg497
Length=1986

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 21/24 (88%), Gaps = 0/24 (0%)
 Strand=Plus/Plus

Query  161  CCAACGCCAAGTTGGAAATCACCA  184
            |||| |||||||||||| ||| ||
Sbjct  758  CCAAGGCCAAGTTGGAATTCAACA  781


> KLDOg480
Length=2019

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  772  GCTGCTGCTGCTGTTC  787
            ||||||||||||||||
Sbjct  247  GCTGCTGCTGCTGTTC  232


> KLDOg473
Length=342

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  492  ATTGGCCCCAAAGTTGAAC  510
            ||||| |||||||||||||
Sbjct  150  ATTGGACCCAAAGTTGAAC  168


> KLDOg265
Length=3051

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  688  TTGATTTCCGGTAAGT  703
            ||||||||||||||||
Sbjct  485  TTGATTTCCGGTAAGT  470


> KLDOg73
Length=501

 Score = 30.1 bits (32),  Expect = 5.1
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  764  CTGCCGAAGCTGCTGCTGCTG  784
            ||||||  |||||||||||||
Sbjct  38   CTGCCGTTGCTGCTGCTGCTG  58



Lambda     K      H
   0.634    0.408    0.912 

Gapped
Lambda     K      H
   0.625    0.410    0.780 

Effective search space used: 6070295045


  Database: Kluyveromyces dobzhanskii genes (Sep 2011)
    Posted date:  Sep 16, 2011  10:26 AM
  Number of letters in database: 7,360,030
  Number of sequences in database:  4,995



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2
Query
>query
ATGTCTTACACTACCAGACAAATCGGTGCCAAGAACACCTTGGACTACAAAGTTTTCATC
GAAAAGGATGGCAAGCCAGTGTCTGCCTTCCACGACATCCCATTGTACGCTGACGAAGCC
AATGGCATCTTCAACATGGTTGTCGAAATCCCACGTTGGACCAACGCCAAGTTGGAAATC
ACCAAGGAGGAGAAGTTGAACCCAATCATCCAAGACACCAAGAAGGGTAAGCTAAGATTT
GTGAGAAACTGTTTCCCACACCACGGTTACATCCACAACTACGGTGCTTTCCCACAAACC
TGGGAAGACCCTAACGAGTCCCACCCAGAAACCAAGGCTGTTGGTGACAACGATCCATTG
GATGTGTTGGAAATCGGTGAACAAGTCGCATACACTGGTCAAGTGAAGCAAGTCAAGGTT
CTTGGTGTGATGGCCTTGTTGGACGAAGGTGAGACCGACTGGAAGGTGATTGTGATCGAC
ATCAACGATCCATTGGCCCCAAAGTTGAACGACATTGAGGATGTCGAGAAGCACTTGCCA
GGTTTGCTAAGAGCCACTAACGAATGGTTCAGAATCTACAAGATTCCAGACGGTAAGCCA
GAAAACCAATTTGCCTTCTCTGGTGAAGCCAAGAACAAGAAGTACGCTCTAGAAGTGATC
AGGGAGTGTAACGAAGCTTGGAAGAAGTTGATTTCCGGTAAGTCTGCTGACGCTAAGAAG
ATCGATTTGACCAACACCACGTTGGTCGACACTGCCACTTACTCTGCCGAAGCTGCTGCT
GCTGTTCCACCAGCACACGTCTTGCCAGACGAGCCAATCGACAAGTCCATTGACAAGTGG
TTCTTCATCTCCGGTTCTGCTTGA
Documentation
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Adhoc 12.7 SciLifeLab tools Per Kraulis (per.kraulis@scilifelab.se)