blastn task: [no title]

Status
finished finished
Modified 2016-05-16T11:36:17Z
CPU time (s) 0.0
Size (bytes) 10969
Command blastn -num_descriptions 500 -outfmt 0 -dust no -db gsASS001Lm.aug.trna.KL.rRNA2.fna -num_alignments 250 -evalue 10.0 -task blastn
Error [none]
Output
BLASTN 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: Kluyveromyces dobzhanskii (Sep 2011)
           1 sequences; 10,741,898 total letters



Query= 
Length=864
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  gsASS001Lm                                                          1153    0.0  


> gsASS001Lm
Length=10741898

 Score = 1153 bits (1278),  Expect = 0.0
 Identities = 770/857 (90%), Gaps = 0/857 (0%)
 Strand=Plus/Minus

Query  6        TTACACTACCAGACAAATCGGTGCCAAGAACACCTTGGACTACAAAGTTTTCATCGAAAA  65
                ||||||  |||||||| | ||||| |||||||| ||||||||||  ||||||||||||||
Sbjct  6794805  TTACACAGCCAGACAAGTTGGTGCTAAGAACACTTTGGACTACAGGGTTTTCATCGAAAA  6794746

Query  66       GGATGGCAAGCCAGTGTCTGCCTTCCACGACATCCCATTGTACGCTGACGAAGCCAATGG  125
                |||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||| ||
Sbjct  6794745  GGATGGTAAGCCAGTTTCTGCTTTCCACGACATCCCATTGTACGCTGATGAGGCCAACGG  6794686

Query  126      TATCTTCAACATGGTTGTCGAAATCCCACGTTGGACCAACGCCAAGTTGGAAATCACCAA  185
                 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct  6794685  GATCTTCAACATGGTCGTTGAAATCCCACGTTGGACCAACGCCAAGTTGGAAATCACCAA  6794626

Query  186      GGAGGAGAAGTTGAACCCAATCATCCAAGACACCAAGAAGGGTAAGCTAAGATTTGTGAG  245
                ||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct  6794625  GGAGGAGAAATTGAACCCAATTATCCAGGACACCAAGAAGGGTAAGCTAAGATTTGTGAG  6794566

Query  246      AAACTGTTTCCCACACCACGGTTACATCCACAACTACGGTGCCTTCCCACAAACCTGGGA  305
                |||||||||||||||||| |||||||| |||||||||||||| ||||| || ||||||||
Sbjct  6794565  AAACTGTTTCCCACACCATGGTTACATTCACAACTACGGTGCTTTCCCTCAGACCTGGGA  6794506

Query  306      AGATCCTAACGAGTCCCACCCAGAAACCAAGGCTGTTGGTGACAACGATCCATTGGATGT  365
                ||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  6794505  AGACCCTAACGAGGCTCACCCAGAAACCAAGGCTGTTGGTGACAACGATCCATTGGACGT  6794446

Query  366      GTTGGAAATCGGTGAACAAGTCGCATACACTGGTCAAGTGAAGCAAGTCAAGGTTCTTGG  425
                ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  6794445  GTTGGAAATCGGTGAGCAAGTTGCATACACTGGTCAAGTGAAGCAAGTCAAGGTTCTTGG  6794386

Query  426      TGTGATGGCCTTGTTGGACGAAGGTGAGACCGACTGGAAGGTGATTGTGATCGACATCAA  485
                ||||||||| |||||||||||||| ||||||||||||||||||||||  |||||||||||
Sbjct  6794385  TGTGATGGCTTTGTTGGACGAAGGGGAGACCGACTGGAAGGTGATTGCCATCGACATCAA  6794326

Query  486      CGATCCATTGGCCCCAAAGTTGAACGACATTGAGGATGTCGAGAAGCACTTGCCAGGTTT  545
                ||| |||||||| || |||||||||||||| || |||||||| |||||| ||||||||||
Sbjct  6794325  CGACCCATTGGCTCCTAAGTTGAACGACATCGAAGATGTCGAAAAGCACCTGCCAGGTTT  6794266

Query  546      GCTAAGAGCCACTAACGAATGGTTCAGAATCTACAAGATTCCAGACGGTAAGCCAGAAAA  605
                | | |||||||| |||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct  6794265  GTTGAGAGCCACCAACGAATGGTTCAGAATCTACAAGATCCCTGACGGTAAGCCAGAGAA  6794206

Query  606      CCAATTTGCCTTCTCTGGTGAAGCCAAGAACAAGAAGTACGCTCTAGAAGTGATCAGGGA  665
                 |||||||| ||||| ||||| |||||||||||||||||| || | ||||| ||||| ||
Sbjct  6794205  TCAATTTGCTTTCTCCGGTGAGGCCAAGAACAAGAAGTACACTTTGGAAGTCATCAGAGA  6794146

Query  666      GTGTAACGAAGCTTGGAAGAAGTTGATTTCCGGTAAGTCTGCTGACGCTAAGAAGATCGA  725
                |   |||||||| |||||||||||||| ||||| ||| || | ||||| |||||||||||
Sbjct  6794145  GACCAACGAAGCCTGGAAGAAGTTGATCTCCGGCAAGGCTTCCGACGCCAAGAAGATCGA  6794086

Query  726      TTTGACCAACACCACGTTGGTCGACACTGCCACTTACTCTGCCGAGGCAGCTGCTGCTGT  785
                ||||||||||||||| |||| ||| ||  | ||||||||||| || || ||  |||||||
Sbjct  6794085  TTTGACCAACACCACTTTGGCCGAGACCCCAACTTACTCTGCTGAAGCTGCCTCTGCTGT  6794026

Query  786      TCCACCAGCACACGTCTTGCCAGACGAGCCAATCGACAAGTCCATTGACAAGTGGTTCTT  845
                |||| | ||  ||||||||||||||||  |||||||||||||||| ||||||||||||||
Sbjct  6794025  TCCAGCTGCTAACGTCTTGCCAGACGAAGCAATCGACAAGTCCATCGACAAGTGGTTCTT  6793966

Query  846      CATCTCCGGTTCTGCTT  862
                |||||| ||||| ||||
Sbjct  6793965  CATCTCTGGTTCCGCTT  6793949


 Score = 31.9 bits (34),  Expect = 2.2
 Identities = 23/27 (86%), Gaps = 0/27 (0%)
 Strand=Plus/Plus

Query  124      GGTATCTTCAACATGGTTGTCGAAATC  150
                ||||||||| |||   |||||||||||
Sbjct  3560976  GGTATCTTCGACACCTTTGTCGAAATC  3561002


 Score = 31.9 bits (34),  Expect = 2.2
 Identities = 20/22 (91%), Gaps = 0/22 (0%)
 Strand=Plus/Minus

Query  621      TGGTGAAGCCAAGAACAAGAAG  642
                || ||||||||||||||| |||
Sbjct  3799948  TGCTGAAGCCAAGAACAAAAAG  3799927


 Score = 31.9 bits (34),  Expect = 2.2
 Identities = 22/25 (88%), Gaps = 0/25 (0%)
 Strand=Plus/Minus

Query  76       CCAGTGTCTGCCTTCCACGACATCC  100
                ||||||||||| | |||||||| ||
Sbjct  4840621  CCAGTGTCTGCGTCCCACGACAACC  4840597


 Score = 31.9 bits (34),  Expect = 2.2
 Identities = 22/25 (88%), Gaps = 0/25 (0%)
 Strand=Plus/Plus

Query  495      GGCCCCAAAGTTGAACGACATTGAG  519
                |||| ||||||  ||||||||||||
Sbjct  5581195  GGCCACAAAGTCTAACGACATTGAG  5581219


 Score = 31.9 bits (34),  Expect = 2.2
 Identities = 20/22 (91%), Gaps = 0/22 (0%)
 Strand=Plus/Minus

Query  342      TGGTGACAACGATCCATTGGAT  363
                ||| |||||||||||||| |||
Sbjct  7623810  TGGAGACAACGATCCATTCGAT  7623789


 Score = 31.9 bits (34),  Expect = 2.2
 Identities = 26/32 (82%), Gaps = 0/32 (0%)
 Strand=Plus/Plus

Query  597      GCCAGAAAACCAATTTGCCTTCTCTGGTGAAG  628
                || ||||||||||||| ||| |   |||||||
Sbjct  8729482  GCGAGAAAACCAATTTCCCTGCAGAGGTGAAG  8729513


 Score = 30.1 bits (32),  Expect = 7.6
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  688     TTGATTTCCGGTAAGT  703
               ||||||||||||||||
Sbjct  561473  TTGATTTCCGGTAAGT  561488


 Score = 30.1 bits (32),  Expect = 7.6
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  492      ATTGGCCCCAAAGTTGAAC  510
                ||||| |||||||||||||
Sbjct  1017221  ATTGGACCCAAAGTTGAAC  1017239


 Score = 30.1 bits (32),  Expect = 7.6
 Identities = 21/24 (88%), Gaps = 0/24 (0%)
 Strand=Plus/Minus

Query  161      CCAACGCCAAGTTGGAAATCACCA  184
                |||| |||||||||||| ||| ||
Sbjct  1076494  CCAAGGCCAAGTTGGAATTCAACA  1076471


 Score = 30.1 bits (32),  Expect = 7.6
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  721      ATCGATTTGACCAACA  736
                ||||||||||||||||
Sbjct  1279662  ATCGATTTGACCAACA  1279647


 Score = 30.1 bits (32),  Expect = 7.6
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  715      AAGAAGATCGATTTGACCA  733
                ||||||| |||||||||||
Sbjct  1709163  AAGAAGAACGATTTGACCA  1709145


 Score = 30.1 bits (32),  Expect = 7.6
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  115      GAAGCCAATGGTATCTTCAAC  135
                || |||||||||||||| |||
Sbjct  2765012  GATGCCAATGGTATCTTGAAC  2764992


 Score = 30.1 bits (32),  Expect = 7.6
 Identities = 21/24 (88%), Gaps = 0/24 (0%)
 Strand=Plus/Plus

Query  102      ATTGTACGCTGACGAAGCCAATGG  125
                ||||| |  |||||||||||||||
Sbjct  3238724  ATTGTTCATTGACGAAGCCAATGG  3238747


 Score = 30.1 bits (32),  Expect = 7.6
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  16       AGACAAATCGGTGCCAAGAAC  36
                |||||||||||||| || |||
Sbjct  3302891  AGACAAATCGGTGCGAACAAC  3302871


 Score = 30.1 bits (32),  Expect = 7.6
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  606      CCAATTTGCCTTCTCTGGTGA  626
                ||||||  |||||||||||||
Sbjct  3343107  CCAATTAACCTTCTCTGGTGA  3343087


 Score = 30.1 bits (32),  Expect = 7.6
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  329      AAACCAAGGCTGTTGGTGA  347
                || ||||||||||||||||
Sbjct  4779075  AACCCAAGGCTGTTGGTGA  4779093


 Score = 30.1 bits (32),  Expect = 7.6
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  727      TTGACCAACACCACGTTGG  745
                ||||||||||||| |||||
Sbjct  5536425  TTGACCAACACCAAGTTGG  5536443


 Score = 30.1 bits (32),  Expect = 7.6
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  438      GTTGGACGAAGGTGAGACC  456
                |||||||||||||| ||||
Sbjct  6127136  GTTGGACGAAGGTGTGACC  6127154


 Score = 30.1 bits (32),  Expect = 7.6
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  673      GAAGCTTGGAAGAAGT  688
                ||||||||||||||||
Sbjct  7022812  GAAGCTTGGAAGAAGT  7022827


 Score = 30.1 bits (32),  Expect = 7.6
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  61       GAAAAGGATGGCAAGCCAGTG  81
                ||||||  |||||||||||||
Sbjct  7765970  GAAAAGACTGGCAAGCCAGTG  7765950



Lambda     K      H
   0.634    0.408    0.912 

Gapped
Lambda     K      H
   0.625    0.410    0.780 

Effective search space used: 9001688736


  Database: Kluyveromyces dobzhanskii (Sep 2011)
    Posted date:  Sep 16, 2011  10:25 AM
  Number of letters in database: 10,741,898
  Number of sequences in database:  1



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2
Query
>
ATGTCTTACACTACCAGACAAATCGGTGCCAAGAACACCTTGGACTACAAAGTTTTCATCGAAAAGGATGGCAAGCCAGTGTCTGCCTTCCACGACATCCCATTGTACGCTGACGAAGCCAATGGTATCTTCAACATGGTTGTCGAAATCCCACGTTGGACCAACGCCAAGTTGGAAATCACCAAGGAGGAGAAGTTGAACCCAATCATCCAAGACACCAAGAAGGGTAAGCTAAGATTTGTGAGAAACTGTTTCCCACACCACGGTTACATCCACAACTACGGTGCCTTCCCACAAACCTGGGAAGATCCTAACGAGTCCCACCCAGAAACCAAGGCTGTTGGTGACAACGATCCATTGGATGTGTTGGAAATCGGTGAACAAGTCGCATACACTGGTCAAGTGAAGCAAGTCAAGGTTCTTGGTGTGATGGCCTTGTTGGACGAAGGTGAGACCGACTGGAAGGTGATTGTGATCGACATCAACGATCCATTGGCCCCAAAGTTGAACGACATTGAGGATGTCGAGAAGCACTTGCCAGGTTTGCTAAGAGCCACTAACGAATGGTTCAGAATCTACAAGATTCCAGACGGTAAGCCAGAAAACCAATTTGCCTTCTCTGGTGAAGCCAAGAACAAGAAGTACGCTCTAGAAGTGATCAGGGAGTGTAACGAAGCTTGGAAGAAGTTGATTTCCGGTAAGTCTGCTGACGCTAAGAAGATCGATTTGACCAACACCACGTTGGTCGACACTGCCACTTACTCTGCCGAGGCAGCTGCTGCTGTTCCACCAGCACACGTCTTGCCAGACGAGCCAATCGACAAGTCCATTGACAAGTGGTTCTTCATCTCCGGTTCTGCTTGA
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Adhoc 12.7 SciLifeLab tools Per Kraulis (per.kraulis@scilifelab.se)