blastn task: [no title]

Status
finished finished
Modified 2016-05-16T13:27:01Z
CPU time (s) 0.0
Size (bytes) 11970
Command blastn -num_descriptions 500 -outfmt 0 -dust no -db gsASS001Lm.aug.trna.KL.rRNA2.fna -num_alignments 250 -evalue 10.0 -task blastn
Error [none]
Output
BLASTN 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: Kluyveromyces dobzhanskii (Sep 2011)
           1 sequences; 10,741,898 total letters



Query= query

Length=922
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  gsASS001Lm                                                           441    1e-123


> gsASS001Lm
Length=10741898

 Score =  441 bits (488),  Expect = 1e-123
 Identities = 653/916 (72%), Gaps = 41/916 (4%)
 Strand=Plus/Plus

Query  21       TGACTTTAACAAGGTCTCCGACTTTCAACTTCAACCGATCCCATTTTCAAAAAATATTTC  80
                |||||| | ||||   || |  ||  |||| ||  | ||| | || || | |||||||||
Sbjct  8212143  TGACTTCAGCAAGACGTCTGCTTTGAAACTACAGTCAATCTCGTTCTCGAGAAATATTTC  8212202

Query  81       TAGAACCGATTTCAACCAATGGTTGAAGGACCAGGAACGAGTTTCGTTTGAACGTATGTT  140
                 ||||  |||||| ||  |||||| |  || |||       | |||||  | | ||||||
Sbjct  8212203  GAGAAATGATTTCCACGGATGGTTAAGAGAACAGCTTGATATCTCGTTGTACCATATGTT  8212262

Query  141      CGATAATATTTGCAACGAAGAATCGTCAGGAAAATTCGACAACTGTTTCCCCGGTGTAGT  200
                ||| ||||| ||| | | |||| ||||      |||||  || |||  ||| ||||| ||
Sbjct  8212263  CGACAATATATGCGAAGCAGAAACGTCGTCTGTATTCGGAAATTGTACCCCTGGTGTCGT  8212322

Query  201      TTTCGCATCTCCATCCAAGAGTAAACCGGATTACTTTTACCATTGGATTAGAGATGGCGC  260
                ||||||||| || ||||  ||| |||||||||||||||| |||||||| |||||||| ||
Sbjct  8212323  TTTCGCATCGCCCTCCAGAAGTGAACCGGATTACTTTTATCATTGGATCAGAGATGGGGC  8212382

Query  261      CATTACCATTAACACTTTGATCAACAC--ATATTCGGAGGTCGACAAAGAACGCACTTTG  318
                 ||||||||||| |||||||| || ||  |||||  || || || | |||||| ||| | 
Sbjct  8212383  TATTACCATTAATACTTTGATTAATACTAATATT--GACGTTGATAGAGAACGGACTCTT  8212440

Query  319      AAAACAGTCTTAAACTACGTGAATGCTTCTATCGACTTGCAACATAGGTCTAATCCAAGT  378
                || ||  | | ||| ||| | || || ||| | || |||||||| | |||||| || |||
Sbjct  8212441  AAGACGATTTCAAATTACATCAACGCATCTTTGGATTTGCAACACAAGTCTAACCCTAGT  8212500

Query  379      GGTCCCGTTGATGACCCACTATTGAGAAACTTGGGAGAACCTAAATACCATGTTGACAAT  438
                ||||| | |||||| ||  | || ||||| ||||||||||| || || ||||| ||||||
Sbjct  8212501  GGTCCTGCTGATGATCCTTTGTTCAGAAATTTGGGAGAACCAAAGTATCATGTGGACAAT  8212560

Query  439      TCGCCATTTGAACAGGTTTGGGGTAGACCACAAAATGATGGACCTCCATTAAGAGCCATT  498
                   ||||| |||||||| ||||||||||| ||||| ||||| || ||| |||| ||||||
Sbjct  8212561  AGCCCATTCGAACAGGTCTGGGGTAGACCTCAAAACGATGGCCCACCACTAAGGGCCATT  8212620

Query  499      GCCTTGTTGAATTTCTTG----AACTCAATGA--ATGTGTCCAGCAATAGCGATGCCAAC  552
                || |||||||||||||||    ||||||| ||  | |||    | || ||       || 
Sbjct  8212621  GCGTTGTTGAATTTCTTGACCCAACTCAAAGACGAAGTG----GAAAGAG-------AAG  8212669

Query  553      AGTGATTACCAATGGATCTTTGATGATTTAATTACATTGGACTTGAAGTTTGTCTTGTAC  612
                |||  |||    ||||| || ||||   | ||  |  | || ||||| ||  | ||| | 
Sbjct  8212670  AGT--TTA--GTTGGATTTTCGATGGAGTGATCTCGCTAGATTTGAAATTCATTTTGCAA  8212725

Query  613      AACTGGCACGTCTCAAGCTTCGATTTGTGGGAAGAAGTTGATGCGTACCATTTCTTCACG  672
                ||||||||| |  | |  || ||||| ||||||||||||  |||||| ||||| ||||| 
Sbjct  8212726  AACTGGCACATTGCGACGTTTGATTTATGGGAAGAAGTTTGTGCGTATCATTTTTTCACC  8212785

Query  673      AGTATGGTTCAATTGAAGGCTTTGGTCGATGGTAG--AGCA--TTCATACTGAAAAAACT  728
                || ||||||||||| ||||||||||| || || ||  ||||  ||     || |||  ||
Sbjct  8212786  AGCATGGTTCAATTAAAGGCTTTGGTGGAAGGAAGGAAGCACCTTTTAGGTGTAAAGGCT  8212845

Query  729      TTCAAGCGGTATTACATTAACTAGTGCGGAAGATGATC----TCTTGAAAGATCTTGAGG  784
                |      || || |  |||   || |  | | || |||    | ||||| ||| ||||  
Sbjct  8212846  T----CTGGGATAAGCTTA---AGCGAAGCAAAT-ATCGTGTTATTGAAGGATATTGAAT  8212897

Query  785      CTGGTATCGATAAGGTGGAATCCTTCATCAAGAGTTCCAGTTCCGGATTTATTAACCATG  844
                | || || || ||| | |||   ||||| ||   | | |  || || |||||| ||||||
Sbjct  8212898  CGGGCATAGAGAAGATCGAAAGTTTCATTAAAGATGCAAACTCAGGGTTTATTGACCATG  8212957

Query  845      AAAAGGGCTATATTGTGGAGACACCAAGTAACTTGGACCAAAGGTCTGGTTTAGATATCG  904
                ||||||| || |||||||| || || || | ||| ||  |||| ||||||||||| ||||
Sbjct  8212958  AAAAGGGTTACATTGTGGAAACTCCTAGCATCTTAGATGAAAGATCTGGTTTAGACATCG  8213017

Query  905      CAGTCATTATGGCCAG  920
                | || || ||||||||
Sbjct  8213018  CTGTTATCATGGCCAG  8213033


 Score = 31.9 bits (34),  Expect = 2.3
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  836      TTAACCATGAAAAGGGCTAT  855
                |||| |||||||||||||||
Sbjct  3966435  TTAATCATGAAAAGGGCTAT  3966416


 Score = 31.9 bits (34),  Expect = 2.3
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  61       CCATTTTCAAAAAATATTTC  80
                |||||| |||||||||||||
Sbjct  4494114  CCATTTACAAAAAATATTTC  4494133


 Score = 31.9 bits (34),  Expect = 2.3
 Identities = 24/27 (89%), Gaps = 1/27 (3%)
 Strand=Plus/Plus

Query  757      GAAGATGATCTCTTGAAAGATCTTGAG  783
                ||||||||||||||||| | | |||||
Sbjct  9419813  GAAGATGATCTCTTGAACG-TTTTGAG  9419838


 Score = 31.9 bits (34),  Expect = 2.3
 Identities = 23/27 (86%), Gaps = 0/27 (0%)
 Strand=Plus/Plus

Query  557       ATTACCAATGGATCTTTGATGATTTAA  583
                 ||||  |||| |||| |||||||||||
Sbjct  10617502  ATTATAAATGAATCTGTGATGATTTAA  10617528


 Score = 30.1 bits (32),  Expect = 8.1
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  151     TGCAACGAAGAATCGT  166
               ||||||||||||||||
Sbjct  610096  TGCAACGAAGAATCGT  610111


 Score = 30.1 bits (32),  Expect = 8.1
 Identities = 22/26 (85%), Gaps = 0/26 (0%)
 Strand=Plus/Minus

Query  619      CACGTCTCAAGCTTCGATTTGTGGGA  644
                |||||||  ||||||||||| || ||
Sbjct  1101534  CACGTCTTCAGCTTCGATTTCTGAGA  1101509


 Score = 30.1 bits (32),  Expect = 8.1
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  686      TGAAGGCTTTGGTCGA  701
                ||||||||||||||||
Sbjct  1173438  TGAAGGCTTTGGTCGA  1173423


 Score = 30.1 bits (32),  Expect = 8.1
 Identities = 22/26 (85%), Gaps = 0/26 (0%)
 Strand=Plus/Minus

Query  510      TTTCTTGAACTCAATGAATGTGTCCA  535
                ||||||||||||| ||| | | ||||
Sbjct  1441544  TTTCTTGAACTCATTGAGTCTTTCCA  1441519


 Score = 30.1 bits (32),  Expect = 8.1
 Identities = 21/24 (88%), Gaps = 0/24 (0%)
 Strand=Plus/Minus

Query  673      AGTATGGTTCAATTGAAGGCTTTG  696
                || || |||| |||||||||||||
Sbjct  2278418  AGGATCGTTCCATTGAAGGCTTTG  2278395


 Score = 30.1 bits (32),  Expect = 8.1
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  822      CAGTTCCGGATTTATT  837
                ||||||||||||||||
Sbjct  2934529  CAGTTCCGGATTTATT  2934544


 Score = 30.1 bits (32),  Expect = 8.1
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  436      AATTCGCCATTTGAAC  451
                ||||||||||||||||
Sbjct  3631686  AATTCGCCATTTGAAC  3631671


 Score = 30.1 bits (32),  Expect = 8.1
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  507      GAATTTCTTGAACTCA  522
                ||||||||||||||||
Sbjct  4129842  GAATTTCTTGAACTCA  4129857


 Score = 30.1 bits (32),  Expect = 8.1
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  505      TTGAATTTCTTGAACTCAA  523
                ||||||||||| |||||||
Sbjct  4333708  TTGAATTTCTTTAACTCAA  4333726


 Score = 30.1 bits (32),  Expect = 8.1
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  308      AACGCACTTTGAAAACAGTCT  328
                |||||||||||| | ||||||
Sbjct  4684724  AACGCACTTTGATATCAGTCT  4684704


 Score = 30.1 bits (32),  Expect = 8.1
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  5        AATATATACAAGTAAT  20
                ||||||||||||||||
Sbjct  6090784  AATATATACAAGTAAT  6090769


 Score = 30.1 bits (32),  Expect = 8.1
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  116      AACGAGTTTCGTTTGA  131
                ||||||||||||||||
Sbjct  6913617  AACGAGTTTCGTTTGA  6913602


 Score = 30.1 bits (32),  Expect = 8.1
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  267      CATTAACACTTTGATCAACAC  287
                ||||||||||| |||| ||||
Sbjct  6996094  CATTAACACTTGGATCTACAC  6996074


 Score = 30.1 bits (32),  Expect = 8.1
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  316      TTGAAAACAGTCTTAA  331
                ||||||||||||||||
Sbjct  7831763  TTGAAAACAGTCTTAA  7831778


 Score = 30.1 bits (32),  Expect = 8.1
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  526      AATGTGTCCAGCAATA  541
                ||||||||||||||||
Sbjct  8195981  AATGTGTCCAGCAATA  8195966


 Score = 30.1 bits (32),  Expect = 8.1
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  65       TTTCAAAAAATATTTCTAGAA  85
                ||||| ||||||||||| |||
Sbjct  8509638  TTTCACAAAATATTTCTTGAA  8509618


 Score = 30.1 bits (32),  Expect = 8.1
 Identities = 22/26 (85%), Gaps = 0/26 (0%)
 Strand=Plus/Plus

Query  838      AACCATGAAAAGGGCTATATTGTGGA  863
                ||| ||||||||||||  ||||| ||
Sbjct  8528002  AACGATGAAAAGGGCTCAATTGTCGA  8528027


 Score = 30.1 bits (32),  Expect = 8.1
 Identities = 25/31 (81%), Gaps = 0/31 (0%)
 Strand=Plus/Plus

Query  491      GAGCCATTGCCTTGTTGAATTTCTTGAACTC  521
                ||||||||||||||  |||  |||| || ||
Sbjct  8717476  GAGCCATTGCCTTGGAGAAAATCTTTAAATC  8717506


 Score = 30.1 bits (32),  Expect = 8.1
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  508       AATTTCTTGAACTCAATGA  526
                 ||||||||||||| |||||
Sbjct  10396703  AATTTCTTGAACTGAATGA  10396721



Lambda     K      H
   0.634    0.408    0.912 

Gapped
Lambda     K      H
   0.625    0.410    0.780 

Effective search space used: 9624717312


  Database: Kluyveromyces dobzhanskii (Sep 2011)
    Posted date:  Sep 16, 2011  10:25 AM
  Number of letters in database: 10,741,898
  Number of sequences in database:  1



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2
Query
>query
GGTCAATATATACAAGTAATTGACTTTAACAAGGTCTCCGACTTTCAACTTCAACCGATCCCATTTTCAAAAAATATTTCTAGAACCGATTTCAACCAATGGTTGAAGGACCAGGAACGAGTTTCGTTTGAACGTATGTTCGATAATATTTGCAACGAAGAATCGTCAGGAAAATTCGACAACTGTTTCCCCGGTGTAGTTTTCGCATCTCCATCCAAGAGTAAACCGGATTACTTTTACCATTGGATTAGAGATGGCGCCATTACCATTAACACTTTGATCAACACATATTCGGAGGTCGACAAAGAACGCACTTTGAAAACAGTCTTAAACTACGTGAATGCTTCTATCGACTTGCAACATAGGTCTAATCCAAGTGGTCCCGTTGATGACCCACTATTGAGAAACTTGGGAGAACCTAAATACCATGTTGACAATTCGCCATTTGAACAGGTTTGGGGTAGACCACAAAATGATGGACCTCCATTAAGAGCCATTGCCTTGTTGAATTTCTTGAACTCAATGAATGTGTCCAGCAATAGCGATGCCAACAGTGATTACCAATGGATCTTTGATGATTTAATTACATTGGACTTGAAGTTTGTCTTGTACAACTGGCACGTCTCAAGCTTCGATTTGTGGGAAGAAGTTGATGCGTACCATTTCTTCACGAGTATGGTTCAATTGAAGGCTTTGGTCGATGGTAGAGCATTCATACTGAAAAAACTTTCAAGCGGTATTACATTAACTAGTGCGGAAGATGATCTCTTGAAAGATCTTGAGGCTGGTATCGATAAGGTGGAATCCTTCATCAAGAGTTCCAGTTCCGGATTTATTAACCATGAAAAGGGCTATATTGTGGAGACACCAAGTAACTTGGACCAAAGGTCTGGTTTAGATATCGCAGTCATTATGGCCAGTA
Documentation
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Adhoc 12.7 SciLifeLab tools Per Kraulis (per.kraulis@scilifelab.se)