tblastn task: test

Status
finished finished
Modified 2017-07-03T08:30:41Z
CPU time (s) 4.3
Size (bytes) 30019
Command tblastn -num_descriptions 500 -outfmt 0 -db_gencode 1 -db Betula_pendula_genome.fasta -num_alignments 250 -seg '12 2.2 2.5' -evalue 10.0
Error [none]
Output
TBLASTN 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: Betula pendula genome
           5,642 sequences; 435,172,141 total letters



Query= sp|P01112|RASH_HUMAN GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ENA|FXXK01000884|FXXK01000884.1 Betula pendula genome assembly,...  81.3    4e-15
  ENA|FXXK01000345|FXXK01000345.1 Betula pendula genome assembly,...  81.3    4e-15
  ENA|FXXK01000880|FXXK01000880.1 Betula pendula genome assembly,...  72.4    2e-12
  ENA|FXXK01000030|FXXK01000030.1 Betula pendula genome assembly,...  64.7    5e-10
  ENA|FXXK01000792|FXXK01000792.1 Betula pendula genome assembly,...  62.8    2e-09
  ENA|FXXK01000002|FXXK01000002.1 Betula pendula genome assembly,...  55.1    4e-07
  ENA|FXXK01000460|FXXK01000460.1 Betula pendula genome assembly,...  50.8    7e-06
  ENA|FXXK01000084|FXXK01000084.1 Betula pendula genome assembly,...  48.5    3e-05
  ENA|FXXK01000761|FXXK01000761.1 Betula pendula genome assembly,...  47.8    5e-05
  ENA|FXXK01000266|FXXK01000266.1 Betula pendula genome assembly,...  46.2    1e-04
  ENA|FXXK01000092|FXXK01000092.1 Betula pendula genome assembly,...  46.2    2e-04
  ENA|FXXK01001403|FXXK01001403.1 Betula pendula genome assembly,...  44.7    5e-04
  ENA|FXXK01002296|FXXK01002296.1 Betula pendula genome assembly,...  41.6    0.003
  ENA|FXXK01000053|FXXK01000053.1 Betula pendula genome assembly,...  40.4    0.009
  ENA|FXXK01001218|FXXK01001218.1 Betula pendula genome assembly,...  40.4    0.009
  ENA|FXXK01000390|FXXK01000390.1 Betula pendula genome assembly,...  32.0    0.011
  ENA|FXXK01001143|FXXK01001143.1 Betula pendula genome assembly,...  39.7    0.013
  ENA|FXXK01000018|FXXK01000018.1 Betula pendula genome assembly,...  38.9    0.026
  ENA|FXXK01001616|FXXK01001616.1 Betula pendula genome assembly,...  38.5    0.029
  ENA|FXXK01000640|FXXK01000640.1 Betula pendula genome assembly,...  37.4    0.074
  ENA|FXXK01002362|FXXK01002362.1 Betula pendula genome assembly,...  37.4    0.080
  ENA|FXXK01001979|FXXK01001979.1 Betula pendula genome assembly,...  36.6    0.11 
  ENA|FXXK01001605|FXXK01001605.1 Betula pendula genome assembly,...  36.6    0.11 
  ENA|FXXK01000344|FXXK01000344.1 Betula pendula genome assembly,...  36.2    0.15 
  ENA|FXXK01000636|FXXK01000636.1 Betula pendula genome assembly,...  35.8    0.21 
  ENA|FXXK01001505|FXXK01001505.1 Betula pendula genome assembly,...  35.4    0.28 
  ENA|FXXK01000023|FXXK01000023.1 Betula pendula genome assembly,...  34.3    0.65 
  ENA|FXXK01001219|FXXK01001219.1 Betula pendula genome assembly,...  34.3    0.67 
  ENA|FXXK01000115|FXXK01000115.1 Betula pendula genome assembly,...  33.9    0.90 
  ENA|FXXK01002148|FXXK01002148.1 Betula pendula genome assembly,...  33.5    1.1  
  ENA|FXXK01000728|FXXK01000728.1 Betula pendula genome assembly,...  33.1    1.3  
  ENA|FXXK01002115|FXXK01002115.1 Betula pendula genome assembly,...  33.1    1.5  
  ENA|FXXK01000175|FXXK01000175.1 Betula pendula genome assembly,...  32.7    1.6  
  ENA|FXXK01001520|FXXK01001520.1 Betula pendula genome assembly,...  32.7    2.0  
  ENA|FXXK01000174|FXXK01000174.1 Betula pendula genome assembly,...  31.6    3.5  
  ENA|FXXK01000075|FXXK01000075.1 Betula pendula genome assembly,...  30.4    8.4  


> ENA|FXXK01000884|FXXK01000884.1 Betula pendula genome assembly, 
contig: Contig883 
Length=233214

 Score = 81.3 bits (199),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 49/134 (37%), Positives = 72/134 (54%), Gaps = 2/134 (1%)
 Frame = -2

Query  46      IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD  105
               ++G+T    I DTAGQE Y A+   Y R   G L VF I   ++F++I ++  +++   D
Sbjct  203687  VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVFDITKRQTFDNIQRWLRELRDHAD  203508

Query  106     SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR  164
               S+ V M +VGNK DL   R V     Q LA   G+ ++ETSA     +E AF T++ EI 
Sbjct  203507  SNIVIM-MVGNKSDLNHLRAVSEEDGQALAEREGLSFLETSALEATNIEKAFQTILTEIY  203331

Query  165     QHKLRKLNPPDESG  178
               Q   +K     E+ 
Sbjct  203330  QIISKKALAAQEAA  203289


> ENA|FXXK01000345|FXXK01000345.1 Betula pendula genome assembly, 
contig: Contig344 
Length=666257

 Score = 81.3 bits (199),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 48/138 (35%), Positives = 75/138 (55%), Gaps = 2/138 (1%)
 Frame = -1

Query  46      IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD  105
               ++G T    I DTAGQE Y A+   Y R   G L V+ +    +FE++ ++ ++++   D
Sbjct  174773  VEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD  174594

Query  106     SDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR  164
               S+ V M L+GNK DL   R V +  AQ+ A   G+ +IETSA     VE +F T++ EI 
Sbjct  174593  SNIVIM-LIGNKTDLKHLRAVATEDAQNYAEKEGLSFIETSALEATNVEKSFQTILGEIY  174417

Query  165     QHKLRKLNPPDESGPGCM  182
               +   +K    +E  P  +
Sbjct  174416  RIISKKSLSSEEPAPANI  174363


 Score = 38.1 bits (87),  Expect = 0.045, Method: Compositional matrix adjust.
 Identities = 17/37 (46%), Positives = 23/37 (63%), Gaps = 0/37 (0%)
 Frame = +2

Query  129     QAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ  165
               + Q  A   GIP++ETSAK    VE AF T+  EI++
Sbjct  172379  EMQAFADELGIPFLETSAKDSINVEQAFLTMAGEIKK  172489


 Score = 35.4 bits (80),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query  81      VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQA  130
               V+ +   +SF ++ Q+  +I R  + D V  +LVGNKCDL    V   Q 
Sbjct  171262  VYDVTEMESFNNVKQWLNEIDRYAN-DSVCKLLVGNKCDLVENKVVDTQT  171408


> ENA|FXXK01000880|FXXK01000880.1 Betula pendula genome assembly, 
contig: Contig879 
Length=250597

 Score = 72.4 bits (176),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 44/133 (34%), Positives = 71/133 (54%), Gaps = 2/133 (1%)
 Frame = -3

Query  46      IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD  105
               ++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++   D
Sbjct  133172  VEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD  132993

Query  106     SDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR  164
               S+ V M L GNK DL   R + +  AQ LA   G+ ++ETSA     ++ AF  ++ +I 
Sbjct  132992  SNIVIM-LAGNKADLNHLRALPAEDAQILAEKEGLSFLETSALEAFNIDKAFQAILLDIY  132816

Query  165     QHKLRKLNPPDES  177
                   RK     E+
Sbjct  132815  HVLSRKALAAQEA  132777


> ENA|FXXK01000030|FXXK01000030.1 Betula pendula genome assembly, 
contig: Contig29 
Length=2223128

 Score = 64.7 bits (156),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 36/101 (36%), Positives = 59/101 (59%), Gaps = 2/101 (1%)
 Frame = -2

Query  64      YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-  122
               Y A+   Y R   G + VF +   +SF+ + ++ E+++   D + V M L+GNKCDL + 
Sbjct  522637  YRAVTSAYYRGAVGAMLVFDMTKRQSFDHMARWLEELRGHADKNIVIM-LIGNKCDLGSL  522461

Query  123     RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI  163
               R V +  AQ+ A+   + ++ETSA     VE AF+T++ EI
Sbjct  522460  RAVPTEDAQEFAQRENLFFMETSALEATNVETAFFTILTEI  522338


 Score = 32.0 bits (71),  Expect = 2.8, Method: Compositional matrix adjust.
 Identities = 20/53 (38%), Positives = 29/53 (55%), Gaps = 1/53 (1%)
 Frame = -1

Query  16      KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAM  67
               K+ L  +  +N F  +   TI   ++ K +VID +T    I DTAGQE  +AM
Sbjct  524537  KTQLLARFARNEFSVDSKATIGVEFQTKTLVIDNKTVKAQIWDTAGQER*AAM  524379


> ENA|FXXK01000792|FXXK01000792.1 Betula pendula genome assembly, 
contig: Contig791 
Length=167261

 Score = 62.8 bits (151),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 34/103 (34%), Positives = 60/103 (59%), Gaps = 2/103 (1%)
 Frame = -3

Query  64     YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-A  122
              + A+   Y R   G L V+ I    ++E++ ++  ++++  +SD V +VLVGNK DL  +
Sbjct  23274  FRAITSSYYRGALGGLLVYDITRRATYENVKKWLRELRQFGNSDMV-VVLVGNKTDLGHS  23098

Query  123    RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ  165
              R V   + +DLA   G+ ++ETSA     VE+AF  ++ +I +
Sbjct  23097  REVSEEEGKDLAEEEGLCFMETSALQNVNVEEAFLNMITKIHE  22969


> ENA|FXXK01000002|FXXK01000002.1 Betula pendula genome assembly, 
contig: Contig1 
Length=1100396

 Score = 55.1 bits (131),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 32/101 (32%), Positives = 55/101 (55%), Gaps = 2/101 (1%)
 Frame = +3

Query  64      YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-A  122
               Y A+   Y R   G + V+ I    SF+ + ++ E+++   D + + + L+GNK DL   
Sbjct  115494  YRAVTSAYYRGALGAMLVYDITKRPSFDHVARWVEELRAHAD-NSIVITLIGNKADLVDL  115670

Query  123     RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI  163
               R V +  A + A + G+ + ETSA +   V+ AF+ L+ EI
Sbjct  115671  RAVPTEDAIEFAENQGLFFSETSALSGDNVDTAFFRLLEEI  115793


> ENA|FXXK01000460|FXXK01000460.1 Betula pendula genome assembly, 
contig: Contig459 
Length=341391

 Score = 50.8 bits (120),  Expect = 7e-06, Method: Compositional matrix adjust.
 Identities = 33/117 (29%), Positives = 51/117 (44%), Gaps = 33/117 (28%)
 Frame = -1

Query  81      VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQA----------  130
               V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A  V S +           
Sbjct  274791  VYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSSETAKVKTMLPMA  274615

Query  131     ----------------------QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ  165
                                     +  A   GIP++ETSAK    VE AF  +  +I+ 
Sbjct  274614  VFSFSGLLIIEMTVWTCSDLFFKAFADEIGIPFMETSAKNATNVEQAFMAMSADIKN  274444


> ENA|FXXK01000084|FXXK01000084.1 Betula pendula genome assembly, 
contig: Contig83 
Length=307450

 Score = 48.5 bits (114),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 22/68 (33%), Positives = 44/68 (65%), Gaps = 2/68 (2%)
 Frame = -1

Query  88      KSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSA  146
               ++F  +  + E  ++  +++ + ++L+GNKCDLA  R V + + +  A+ +G+ ++E SA
Sbjct  171205  ETFNHLASWLEDARQHANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA  171029

Query  147     KTRQGVED  154
               KT Q VE+
Sbjct  171028  KTAQNVEE  171005


> ENA|FXXK01000761|FXXK01000761.1 Betula pendula genome assembly, 
contig: Contig760 
Length=131823

 Score = 47.8 bits (112),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 29/87 (34%), Positives = 46/87 (53%), Gaps = 1/87 (1%)
 Frame = -2

Query  16     KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT  74
              KS L  +  +N F      TI   ++ QV+ IDG+     I DTAGQE + A+   Y R 
Sbjct  47720  KSNLLSRYARNEFNMHSKATIGVEFQTQVMDIDGKEVKAQIWDTAGQERFRAVTSAYYRG  47541

Query  75     GEGFLCVFAINNTKSFEDIHQYREQIK  101
                G L V+ I+   +F+ I ++ +++K
Sbjct  47540  AVGALVVYDISRRTTFDSIARWLDELK  47460


> ENA|FXXK01000266|FXXK01000266.1 Betula pendula genome assembly, 
contig: Contig265 
Length=394639

 Score = 46.2 bits (108),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (59%), Gaps = 1/65 (1%)
 Frame = -3

Query  112     VLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK  170
               +LVGNKCDL   R V   + + LA + G+ ++ETSA     V+ AF  ++REI  +  RK
Sbjct  103388  MLVGNKCDLENIRDVSVEEGKGLAEAEGLFFMETSALDATNVQTAFEIVIREIYNNISRK  103209

Query  171     LNPPD  175
               +   D
Sbjct  103208  VLKSD  103194


 Score = 45.8 bits (107),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 32/98 (33%), Positives = 53/98 (55%), Gaps = 1/98 (1%)
 Frame = -2

Query  4       YKLvvvgaggvgKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE  62
               +K+V++G   VGKS L  +  +N F      TI   ++ Q+V IDG+     I DTAGQE
Sbjct  108378  FKIVLIGDSAVGKSNLLSRFARNEFDTNSKATIGVEFQTQMVEIDGKEVKAQIWDTAGQE  108199

Query  63      EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI  100
                + A+   Y R   G L V+ I    +F+ + ++ +++
Sbjct  108198  RFRAVTSAYYRGAVGALVVYDITRRTTFDSVKRWLDEL  108085


> ENA|FXXK01000092|FXXK01000092.1 Betula pendula genome assembly, 
contig: Contig91 
Length=571754

 Score = 46.2 bits (108),  Expect = 2e-04, Method: Composition-based stats.
 Identities = 28/65 (44%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
 Frame = -1

Query  108     DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH  166
               +V  +LVGNK DL  AR V + + + LA + G+ Y+ETSA     V  AF T+V+EI   
Sbjct  176627  NVVTILVGNKSDLKDAREVSTTEGKALAEAQGLFYMETSALDSSNVAAAFQTVVKEIYHI  176448

Query  167     KLRKL  171
                 RK+
Sbjct  176447  LSRKV  176433


 Score = 42.4 bits (98),  Expect = 0.002, Method: Composition-based stats.
 Identities = 25/87 (29%), Positives = 46/87 (53%), Gaps = 1/87 (1%)
 Frame = -1

Query  16      KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT  74
               KS L  +  ++ F      TI   ++ Q + I+G+     I DTAGQE + A+   Y R 
Sbjct  177686  KSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEIKAQIWDTAGQERFRAVTSAYYRG  177507

Query  75      GEGFLCVFAINNTKSFEDIHQYREQIK  101
                 G L V+ I+  ++F++I ++  +++
Sbjct  177506  AVGALLVYDISRRQTFDNIGRWLNELQ  177426


> ENA|FXXK01001403|FXXK01001403.1 Betula pendula genome assembly, 
contig: Contig1402 
Length=228940

 Score = 44.7 bits (104),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 33/122 (28%), Positives = 49/122 (41%), Gaps = 37/122 (30%)
 Frame = +3

Query  80     CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQD-------  132
               V+ + + +SF ++ Q+  +I R   S++V  +LVGNK DL A  V S +          
Sbjct  29775  VVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKSDLTANKVVSYETGKVILNK*A  29951

Query  133    -----------------------------LARSYGIPYIETSAKTRQGVEDAFYTLVREI  163
                                            A   GIP++ETSAK    VE AF  +  EI
Sbjct  29952  GFYCIC*KA*YYSKSLKFNV*TCCFPC*AFADEIGIPFMETSAKNSTNVEQAFMAMAAEI  30131

Query  164    RQ  165
              + 
Sbjct  30132  KN  30137


> ENA|FXXK01002296|FXXK01002296.1 Betula pendula genome assembly, 
contig: Contig2295 
Length=44193

 Score = 41.6 bits (96),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 0/50 (0%)
 Frame = +2

Query  51     CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI  100
              C   I DTAGQE + ++   + R  +  + V+ +N+ KSF++++ +RE+ 
Sbjct  10004  CFWQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEF  10153


> ENA|FXXK01000053|FXXK01000053.1 Betula pendula genome assembly, 
contig: Contig52 
Length=2152462

 Score = 40.4 bits (93),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 18/48 (38%), Positives = 31/48 (65%), Gaps = 1/48 (2%)
 Frame = -1

Query  108      DVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVED  154
                ++ ++L+GNK DLA  R V   + +  A+  G+ ++E SA+T Q VE+
Sbjct  1964221  NMTIMLIGNKSDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE  1964078


> ENA|FXXK01001218|FXXK01001218.1 Betula pendula genome assembly, 
contig: Contig1217 
Length=272641

 Score = 40.4 bits (93),  Expect = 0.009, Method: Compositional matrix adjust.
 Identities = 19/57 (34%), Positives = 32/57 (57%), Gaps = 0/57 (0%)
 Frame = -1

Query  46     IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKR  102
              ID    +  I DTAGQE + ++   + R  E  + V+ +N  KSFE ++ +RE+  +
Sbjct  90517  ID*SNFVWQIWDTAGQERFQSLGAAFYRGAECCVLVYDVNVLKSFETLNTWREEFLK  90347


> ENA|FXXK01000390|FXXK01000390.1 Betula pendula genome assembly, 
contig: Contig389 
Length=736847

 Score = 32.0 bits (71),  Expect(2) = 0.011, Method: Compositional matrix adjust.
 Identities = 13/33 (40%), Positives = 19/33 (58%), Gaps = 0/33 (0%)
 Frame = -1

Query  28      FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG  60
               F  +Y PT+ D++   V +DG    L + DTAG
Sbjct  589919  FRQDYIPTVFDNFSANVAVDGSIVNLGLWDTAG  589821


 Score = 26.6 bits (57),  Expect(2) = 0.011, Method: Compositional matrix adjust.
 Identities = 14/52 (27%), Positives = 28/52 (54%), Gaps = 0/52 (0%)
 Frame = -3

Query  55      ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS  106
               +L   GQE+YS +R    R  + F+  F++ +  S+E++ +    + R+  S
Sbjct  589716  LLCFEGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKVLILMRIPFS  589561


 Score = 38.9 bits (89),  Expect = 0.028, Method: Compositional matrix adjust.
 Identities = 16/46 (35%), Positives = 29/46 (64%), Gaps = 0/46 (0%)
 Frame = +3

Query  55      ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI  100
               I DTAGQE + ++   + R  +  + V+ +N  KSF+D++ +RE+ 
Sbjct  346182  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDDLNNWREEF  346319


 Score = 33.9 bits (76),  Expect = 0.84, Method: Compositional matrix adjust.
 Identities = 18/55 (33%), Positives = 29/55 (53%), Gaps = 1/55 (1%)
 Frame = +3

Query  33      DPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN  86
               + TI  ++  QV+ ++  T   DI DTAGQE Y ++   Y R     + V+ I +
Sbjct  153408  ESTIGAAFFTQVLSLNEATIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS  153572


 Score = 30.8 bits (68),  Expect = 6.7, Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 19/30 (64%), Gaps = 0/30 (0%)
 Frame = +2

Query  130     AQDLARSYGIPYIETSAKTRQGVEDAFYTL  159
                +  A+  G+ ++ETSAKT Q V + FY +
Sbjct  155930  GEQFAKENGMVFLETSAKTAQNVNELFYEI  156019


> ENA|FXXK01001143|FXXK01001143.1 Betula pendula genome assembly, 
contig: Contig1142 
Length=142342

 Score = 39.7 bits (91),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 18/41 (44%), Positives = 24/41 (59%), Gaps = 0/41 (0%)
 Frame = +2

Query  123    RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI  163
              R V  ++  D AR YG  ++E SAKTR  VE  F  LV ++
Sbjct  10379  RVVSKKEGLDFAREYGCLFLECSAKTRVNVEQCFEELVLKV  10501


> ENA|FXXK01000018|FXXK01000018.1 Betula pendula genome assembly, 
contig: Contig17 
Length=461084

 Score = 38.9 bits (89),  Expect = 0.026, Method: Compositional matrix adjust.
 Identities = 20/62 (33%), Positives = 33/62 (54%), Gaps = 1/62 (1%)
 Frame = +3

Query  33      DPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFE  91
               +PTI  ++  Q++   E T   DI DTAGQE Y ++   Y R     + V+ I++   F 
Sbjct  174264  EPTIGAAFFTQILSLAEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISSMVLFM  174443

Query  92      DI  93
               ++
Sbjct  174444  EV  174449


> ENA|FXXK01001616|FXXK01001616.1 Betula pendula genome assembly, 
contig: Contig1615 
Length=202940

 Score = 38.5 bits (88),  Expect = 0.029, Method: Compositional matrix adjust.
 Identities = 16/55 (30%), Positives = 32/55 (59%), Gaps = 0/55 (0%)
 Frame = +2

Query  46     IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI  100
              +D     + I DTAGQE + ++   + R  +  + V+ +N  KSF++++ +RE+ 
Sbjct  16862  VDTSCSYIQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEF  17026


> ENA|FXXK01000640|FXXK01000640.1 Betula pendula genome assembly, 
contig: Contig639 
Length=290173

 Score = 37.4 bits (85),  Expect = 0.074, Method: Compositional matrix adjust.
 Identities = 18/49 (37%), Positives = 27/49 (56%), Gaps = 3/49 (6%)
 Frame = -2

Query  31      EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL  79
               +Y PT+ D++   VV+DG T  L + DTAG+ +  +    Y    E FL
Sbjct  101655  DYVPTVFDNFSANVVVDGSTVNLGLWDTAGKFKTYSFSSPYF---ESFL  101518


> ENA|FXXK01002362|FXXK01002362.1 Betula pendula genome assembly, 
contig: Contig2361 
Length=113038

 Score = 37.4 bits (85),  Expect = 0.080, Method: Compositional matrix adjust.
 Identities = 23/95 (25%), Positives = 40/95 (43%), Gaps = 32/95 (33%)
 Frame = -3

Query  31     EYDPTIEDSYRKQVVIDGETCLLDILDTA-------------------------------  59
              +Y PT+ D++   VV+DG T  L + DTA                               
Sbjct  63413  DYVPTVFDNFSANVVVDGSTVNLGLWDTAGNYITILFRFPGFALRVFSLPLLEV*LVNSW  63234

Query  60     -GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI  93
               GQE+Y+ +R    R  + F+  F++ +  S+E++
Sbjct  63233  TGQEDYNRLRPLSYRGADVFILAFSLISKASYENV  63129


> ENA|FXXK01001979|FXXK01001979.1 Betula pendula genome assembly, 
contig: Contig1978 
Length=65418

 Score = 36.6 bits (83),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 15/34 (45%), Positives = 23/34 (68%), Gaps = 0/34 (0%)
 Frame = +1

Query  28     FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ  61
              F+ +Y PT+ D++   VV+DG T  L + DTAG+
Sbjct  36544  FL*DYVPTVFDNFSANVVVDGSTVNLGLWDTAGK  36645


 Score = 35.4 bits (80),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 15/34 (45%), Positives = 23/34 (68%), Gaps = 0/34 (0%)
 Frame = +2

Query  28     FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ  61
              F+ +Y PT+ D++   VV+DG T  L + DTAG+
Sbjct  41390  FLWDYVPTMFDNFSANVVVDGSTVNLGLCDTAGK  41491


> ENA|FXXK01001605|FXXK01001605.1 Betula pendula genome assembly, 
contig: Contig1604 
Length=76222

 Score = 36.6 bits (83),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 15/34 (45%), Positives = 23/34 (68%), Gaps = 0/34 (0%)
 Frame = +1

Query  28    FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ  61
             F+ +Y PT+ D++   VV+DG T  L + DTAG+
Sbjct  4960  FL*DYVPTVFDNFSANVVVDGSTVNLGLWDTAGK  5061


> ENA|FXXK01000344|FXXK01000344.1 Betula pendula genome assembly, 
contig: Contig343 
Length=502988

 Score = 36.2 bits (82),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 14/42 (34%), Positives = 24/42 (58%), Gaps = 0/42 (0%)
 Frame = -2

Query  31      EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM  72
               +Y PT+ D++   VV+DG    L + DTAG  +  A+   ++
Sbjct  456736  DYVPTVFDNFSANVVVDGSIVNLGLWDTAGNSQLHAVLLAFL  456611


> ENA|FXXK01000636|FXXK01000636.1 Betula pendula genome assembly, 
contig: Contig635 
Length=205964

 Score = 35.8 bits (81),  Expect = 0.21, Method: Compositional matrix adjust.
 Identities = 14/34 (42%), Positives = 23/34 (68%), Gaps = 0/34 (0%)
 Frame = -1

Query  28     FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ  61
              F+ ++ PT+ D++   VV+DG T  L + DTAG+
Sbjct  55226  FL*DFMPTVFDNFSANVVVDGSTVNLGLWDTAGK  55125


 Score = 34.7 bits (78),  Expect = 0.47, Method: Compositional matrix adjust.
 Identities = 14/34 (42%), Positives = 22/34 (65%), Gaps = 0/34 (0%)
 Frame = -2

Query  28    FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ  61
             F+ +Y PT+ D++   VV+DG T  L +  TAG+
Sbjct  9133  FL*DYVPTVFDNFSANVVVDGSTVNLGLWGTAGK  9032


> ENA|FXXK01001505|FXXK01001505.1 Betula pendula genome assembly, 
contig: Contig1504 
Length=89001

 Score = 35.4 bits (80),  Expect = 0.28, Method: Compositional matrix adjust.
 Identities = 14/34 (42%), Positives = 23/34 (68%), Gaps = 0/34 (0%)
 Frame = -2

Query  28     FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ  61
              F+ +Y PT+ D++   VV+DG T  L + DT+G+
Sbjct  86963  FL*DYVPTVFDNFSANVVVDGSTVNLGLWDTSGK  86862


> ENA|FXXK01000023|FXXK01000023.1 Betula pendula genome assembly, 
contig: Contig22 
Length=1958370

 Score = 34.3 bits (77),  Expect = 0.65, Method: Compositional matrix adjust.
 Identities = 13/31 (42%), Positives = 21/31 (68%), Gaps = 0/31 (0%)
 Frame = +1

Query  31      EYDPTIEDSYRKQVVIDGETCLLDILDTAGQ  61
               +Y PT+ D++   VV++G T  L + DTAG+
Sbjct  593764  DYVPTVFDNFSANVVVNGSTVNLGLWDTAGR  593856


> ENA|FXXK01001219|FXXK01001219.1 Betula pendula genome assembly, 
contig: Contig1218 
Length=97947

 Score = 34.3 bits (77),  Expect = 0.67, Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 0/50 (0%)
 Frame = +1

Query  40     YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKS  89
              + + + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  S
Sbjct  26182  FSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQVS  26331


 Score = 33.5 bits (75),  Expect = 0.98, Method: Compositional matrix adjust.
 Identities = 20/49 (41%), Positives = 25/49 (52%), Gaps = 1/49 (2%)
 Frame = +1

Query  110    PMVLVGNKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFY  157
              P VL    C L    +   Q AQ  A+  G+ ++ETSAKT   V D FY
Sbjct  36346  PHVLCSAFCVLLMWLLLFFQEAQAYAQENGLFFMETSAKTAANVNDIFY  36492


> ENA|FXXK01000115|FXXK01000115.1 Betula pendula genome assembly, 
contig: Contig114 
Length=941905

 Score = 33.9 bits (76),  Expect = 0.90, Method: Compositional matrix adjust.
 Identities = 13/30 (44%), Positives = 21/30 (70%), Gaps = 0/30 (0%)
 Frame = -1

Query  31      EYDPTIEDSYRKQVVIDGETCLLDILDTAG  60
               +Y PT+ D++   V++DG+T  L + DTAG
Sbjct  170038  DYIPTVFDNFSANVMVDGKTVNLGLWDTAG  169949


> ENA|FXXK01002148|FXXK01002148.1 Betula pendula genome assembly, 
contig: Contig2147 
Length=117779

 Score = 33.5 bits (75),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 19/66 (29%), Positives = 34/66 (52%), Gaps = 1/66 (1%)
 Frame = +2

Query  55     ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV  114
              I D AGQE+Y ++   Y       + V+ I +  SF    ++ +++ R + + ++ M L 
Sbjct  91235  IYDMAGQEQYHSLAPMYYCAAAVAVMVYDITSMDSFVQAKKWVQEL*R-QGNPNLIMFLA  91411

Query  115    GNKCDL  120
               NK DL
Sbjct  91412  ANKADL  91429


> ENA|FXXK01000728|FXXK01000728.1 Betula pendula genome assembly, 
contig: Contig727 
Length=364035

 Score = 33.1 bits (74),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 14/48 (30%), Positives = 24/48 (50%), Gaps = 0/48 (0%)
 Frame = -1

Query  40      YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT  87
               + + + ++  T   +I DTAGQE Y ++   Y R     + V+ I  T
Sbjct  204876  FSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITTT  204733


> ENA|FXXK01002115|FXXK01002115.1 Betula pendula genome assembly, 
contig: Contig2114 
Length=113174

 Score = 33.1 bits (74),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 15/41 (37%), Positives = 23/41 (57%), Gaps = 0/41 (0%)
 Frame = -2

Query  123    RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI  163
              R V  ++  + AR YG  + E SAKT+  V+  F  LV ++
Sbjct  79477  RVVTKKEGINFAREYGCLFTECSAKTQVNVQQCFEELVLKV  79355


> ENA|FXXK01000175|FXXK01000175.1 Betula pendula genome assembly, 
contig: Contig174 
Length=112005

 Score = 32.7 bits (73),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 13/34 (39%), Positives = 22/34 (65%), Gaps = 0/34 (0%)
 Frame = -2

Query  28     FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ  61
              F+ +Y PT+ D++   V++DG T  L + DTA +
Sbjct  76115  FL*DYVPTVFDNFSANVMVDGSTVKLGLWDTASK  76014


> ENA|FXXK01001520|FXXK01001520.1 Betula pendula genome assembly, 
contig: Contig1519 
Length=184961

 Score = 32.7 bits (73),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 13/30 (44%), Positives = 20/30 (67%), Gaps = 0/30 (0%)
 Frame = -1

Query  31      EYDPTIEDSYRKQVVIDGETCLLDILDTAG  60
               +Y PT+ D++   VV++G T  L + DTAG
Sbjct  157436  DYIPTVFDNFSANVVVEGTTVNLGLWDTAG  157347


> ENA|FXXK01000174|FXXK01000174.1 Betula pendula genome assembly, 
contig: Contig173 
Length=229283

 Score = 31.6 bits (70),  Expect = 3.5, Method: Compositional matrix adjust.
 Identities = 14/34 (42%), Positives = 21/34 (62%), Gaps = 0/34 (0%)
 Frame = +1

Query  28     FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ  61
              F+ +Y PT+ D++   VV+DG T  L   DTA +
Sbjct  43216  FL*DYVPTVFDNFSANVVVDGSTVNLGQWDTASK  43317


> ENA|FXXK01000075|FXXK01000075.1 Betula pendula genome assembly, 
contig: Contig74 
Length=406121

 Score = 30.4 bits (67),  Expect = 8.4, Method: Compositional matrix adjust.
 Identities = 20/77 (26%), Positives = 36/77 (47%), Gaps = 6/77 (7%)
 Frame = -2

Query  53    LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV  112
             ++I+DT G  +++   ++ +R  +G +C+F      S   +    E + R  D   VP +
Sbjct  7093  INIIDTPGHVDFTLEVERALRVLDGAICLF-----DSVAGVEPQSETVWRQADKYGVPRI  6929

Query  113   LVGNKCD-LAARTVESR  128
                NK D L A    +R
Sbjct  6928  CFVNKMDRLGANFFRTR  6878



Lambda     K      H
   0.319    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 11265627204


  Database: Betula pendula genome
    Posted date:  Jul 3, 2017  10:24 AM
  Number of letters in database: 435,172,141
  Number of sequences in database:  5,642



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
Query
>sp|P01112|RASH_HUMAN GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG
QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL
AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGPG
CMSCKCVLS
Documentation
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API
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Adhoc 12.7 SciLifeLab tools Per Kraulis (per.kraulis@scilifelab.se)