blastn task: [no title]

Status
finished finished
Modified 2013-12-06T07:57:47Z
CPU time (s) 0.1
Size (bytes) 17633
Command blastn -num_descriptions 500 -outfmt 0 -dust no -db Kluyveromyces_lactis.ffn -num_alignments 250 -evalue 10.0 -task blastn
Error [none]
Output
BLASTN 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: Kluyveromyces lactis
           5,076 sequences; 7,394,976 total letters



Query= query

Length=1038
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  KLLA0A01650g KLLA0A01650g undefined product 146030:147235 reverse   37.4    0.042
  KLLA0F15389g KLLA0F15389g undefined product 9509648:9510841 rev...  35.6    0.15 
  KLLA0C17578g KLLA0C17578g undefined product 3931314:3935891 for...  35.6    0.15 
  KLLA0D01958g KLLA0D01958g undefined product 4305010:4308396 rev...  33.7    0.51 
  KLLA0B05555g KLLA0B05555g undefined product 1557587:1563580 rev...  33.7    0.51 
  KLLA0A00528g KLLA0A00528g undefined product 44587:48276 reverse     33.7    0.51 
  KLLA0F14443g KLLA0F14443g undefined product 9425485:9428172 rev...  31.9    1.8  
  KLLA0E19713g KLLA0E19713g undefined product 7608818:7609249 for...  31.9    1.8  
  KLLA0E11023g KLLA0E11023g undefined product 6819692:6821116 for...  31.9    1.8  
  KLLA0E10275g KLLA0E10275g undefined product 6759562:6761952 for...  31.9    1.8  
  KLLA0E07811g KLLA0E07811g undefined product 6552041:6553513 for...  31.9    1.8  
  KLLA0D09933g KLLA0D09933g undefined product 4975580:4976737 rev...  31.9    1.8  
  KLLA0B02849g KLLA0B02849g undefined product 1319889:1322870 rev...  31.9    1.8  
  KLLA0A08063g KLLA0A08063g undefined product 717703:719253 forward   31.9    1.8  
  KLLA0A01760g KLLA0A01760g undefined product 154859:156610 forward   31.9    1.8  
  KLLA0F18678g KLLA0F18678g undefined product 9803849:9805363 for...  30.1    6.2  
  KLLA0F04774g KLLA0F04774g undefined product 8552321:8553235 rev...  30.1    6.2  
  KLLA0E23871g KLLA0E23871g undefined product 7973644:7976085 rev...  30.1    6.2  
  KLLA0E03807g KLLA0E03807g undefined product 6198703:6200913 rev...  30.1    6.2  
  KLLA0D14949g KLLA0D14949g undefined product 5397241:5399877 rev...  30.1    6.2  
  KLLA0D13266g KLLA0D13266g undefined product 5275131:5278589 rev...  30.1    6.2  
  KLLA0D03718g KLLA0D03718g undefined product 4456106:4457338 for...  30.1    6.2  
  KLLA0C17160g KLLA0C17160g undefined product 3882383:3884878 for...  30.1    6.2  
  KLLA0C09394g KLLA0C09394g undefined product 3201349:3204903 for...  30.1    6.2  
  KLLA0C07623g KLLA0C07623g undefined product 3050118:3051863 for...  30.1    6.2  
  KLLA0C06490g KLLA0C06490g undefined product 2953213:2953782 rev...  30.1    6.2  
  KLLA0C06182g KLLA0C06182g undefined product 2927705:2932264 for...  30.1    6.2  
  KLLA0C03025g KLLA0C03025g undefined product 2655217:2657517 for...  30.1    6.2  
  KLLA0C02585g KLLA0C02585g undefined product 2612698:2619255 for...  30.1    6.2  
  KLLA0C02519g KLLA0C02519g undefined product 2608894:2609913 rev...  30.1    6.2  
  KLLA0C00803g KLLA0C00803g undefined product 2442682:2444004 for...  30.1    6.2  
  KLLA0B09262g KLLA0B09262g undefined product 1876893:1879718 for...  30.1    6.2  
  KLLA0B06776g KLLA0B06776g undefined product 1656762:1658528 for...  30.1    6.2  
  KLLA0A11792g KLLA0A11792g undefined product 1017064:1021095 for...  30.1    6.2  
  KLLA0A06710g KLLA0A06710g undefined product 608103:609374 forward   30.1    6.2  
  KLLA0A04752g KLLA0A04752g undefined product 425610:426824 reverse   30.1    6.2  
  KLLA0A02255g KLLA0A02255g undefined product 199863:203495 forward   30.1    6.2  


> KLLA0A01650g KLLA0A01650g undefined product 146030:147235 reverse
Length=1206

 Score = 37.4 bits (40),  Expect = 0.042
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  109   ATCGTTTTAGAAGACGAACA  128
             ||||||||||||||||||||
Sbjct  1036  ATCGTTTTAGAAGACGAACA  1055


> KLLA0F15389g KLLA0F15389g undefined product 9509648:9510841 reverse
Length=1194

 Score = 35.6 bits (38),  Expect = 0.15
 Identities = 25/29 (87%), Gaps = 0/29 (0%)
 Strand=Plus/Plus

Query  333  TCTTGCTTGGAGAAGAGAATTTGGAATAA  361
            || |||| | |||||||||||||||| ||
Sbjct  581  TCGTGCTAGCAGAAGAGAATTTGGAAAAA  609


> KLLA0C17578g KLLA0C17578g undefined product 3931314:3935891 forward
Length=4578

 Score = 35.6 bits (38),  Expect = 0.15
 Identities = 35/44 (80%), Gaps = 1/44 (2%)
 Strand=Plus/Plus

Query  386   ATTTGCTAACTGCTGACACTGT-ATCACCGGAGGCTCTGACTGG  428
             ||||| | |||||||||||||| |||| |   | |||||| |||
Sbjct  2372  ATTTGATGACTGCTGACACTGTCATCATCTTTGACTCTGATTGG  2415


 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  480  AAAGCCTGGTAGGCAAAAC  498
            ||| |||||||||||||||
Sbjct  382  AAAACCTGGTAGGCAAAAC  364


> KLLA0D01958g KLLA0D01958g undefined product 4305010:4308396 reverse
Length=3387

 Score = 33.7 bits (36),  Expect = 0.51
 Identities = 29/36 (81%), Gaps = 0/36 (0%)
 Strand=Plus/Plus

Query  345   AAGAGAATTTGGAATAAGTAGTTTTGGAGAAGAAAA  380
             |||||||||||||| |||  |||  ||| |||| ||
Sbjct  2705  AAGAGAATTTGGAAGAAGATGTTGAGGATAAGAGAA  2740


> KLLA0B05555g KLLA0B05555g undefined product 1557587:1563580 reverse
Length=5994

 Score = 33.7 bits (36),  Expect = 0.51
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  23    TTGAAGAAAAAGTTGACA  40
             ||||||||||||||||||
Sbjct  4352  TTGAAGAAAAAGTTGACA  4369


> KLLA0A00528g KLLA0A00528g undefined product 44587:48276 reverse
Length=3690

 Score = 33.7 bits (36),  Expect = 0.51
 Identities = 21/23 (92%), Gaps = 0/23 (0%)
 Strand=Plus/Plus

Query  377   AAAATGGTGATTTGCTAACTGCT  399
             |||||||||||||| |||| |||
Sbjct  2870  AAAATGGTGATTTGATAACAGCT  2892


> KLLA0F14443g KLLA0F14443g undefined product 9425485:9428172 reverse
Length=2688

 Score = 31.9 bits (34),  Expect = 1.8
 Identities = 22/25 (88%), Gaps = 0/25 (0%)
 Strand=Plus/Plus

Query  372   AGAAGAAAATGGTGATTTGCTAACT  396
             ||| ||| ||||||||||| |||||
Sbjct  1176  AGATGAACATGGTGATTTGGTAACT  1200


> KLLA0E19713g KLLA0E19713g undefined product 7608818:7609249 forward
Length=432

 Score = 31.9 bits (34),  Expect = 1.8
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  16   CAAAAGGTTGAAGAAAAAGT  35
            ||||| ||||||||||||||
Sbjct  217  CAAAATGTTGAAGAAAAAGT  236


> KLLA0E11023g KLLA0E11023g undefined product 6819692:6821116 forward
Length=1425

 Score = 31.9 bits (34),  Expect = 1.8
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  189  TAAAGAGAAAAAAAATCATA  208
            || |||||||||||||||||
Sbjct  15   TATAGAGAAAAAAAATCATA  34


> KLLA0E10275g KLLA0E10275g undefined product 6759562:6761952 forward
Length=2391

 Score = 31.9 bits (34),  Expect = 1.8
 Identities = 22/25 (88%), Gaps = 0/25 (0%)
 Strand=Plus/Plus

Query  600   TTTCAAAGATTATCCTGATGTTCCA  624
             ||||| | |||||||||||| ||||
Sbjct  1011  TTTCACACATTATCCTGATGCTCCA  1035


> KLLA0E07811g KLLA0E07811g undefined product 6552041:6553513 forward
Length=1473

 Score = 31.9 bits (34),  Expect = 1.8
 Identities = 23/27 (86%), Gaps = 0/27 (0%)
 Strand=Plus/Plus

Query  13    AAGCAAAAGGTTGAAGAAAAAGTTGAC  39
             |||| ||  | ||||||||||||||||
Sbjct  1434  AAGCGAAGTGGTGAAGAAAAAGTTGAC  1460


> KLLA0D09933g KLLA0D09933g undefined product 4975580:4976737 reverse
Length=1158

 Score = 31.9 bits (34),  Expect = 1.8
 Identities = 29/37 (79%), Gaps = 0/37 (0%)
 Strand=Plus/Minus

Query  447  TTTCGATAACGATTCAAGGCCTATATTGTACTTAAAG  483
            ||| || ||||| | | || ||||  |||||||||||
Sbjct  903  TTTTGAAAACGAGTTAGGGTCTATTATGTACTTAAAG  867


> KLLA0B02849g KLLA0B02849g undefined product 1319889:1322870 reverse
Length=2982

 Score = 31.9 bits (34),  Expect = 1.8
 Identities = 17/17 (100%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  797   AAAAATTGGTTTTTGAT  813
             |||||||||||||||||
Sbjct  1484  AAAAATTGGTTTTTGAT  1468


> KLLA0A08063g KLLA0A08063g undefined product 717703:719253 forward
Length=1551

 Score = 31.9 bits (34),  Expect = 1.8
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  926   AGAAGAAGAGAAAGCATTAT  945
             |||||||||||||| |||||
Sbjct  1401  AGAAGAAGAGAAAGGATTAT  1382


> KLLA0A01760g KLLA0A01760g undefined product 154859:156610 forward
Length=1752

 Score = 31.9 bits (34),  Expect = 1.8
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  445   GGTTTCGATAACGATTCAAG  464
             ||||| ||||||||||||||
Sbjct  1087  GGTTTGGATAACGATTCAAG  1106


> KLLA0F18678g KLLA0F18678g undefined product 9803849:9805363 forward
Length=1515

 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  827  ATTATGTGCCACCTGATCA  845
            |||||||||||| ||||||
Sbjct  653  ATTATGTGCCACATGATCA  671


> KLLA0F04774g KLLA0F04774g undefined product 8552321:8553235 reverse
Length=915

 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  214  AATGAGATGAAACCATTGA  232
            || ||||||||||||||||
Sbjct  721  AACGAGATGAAACCATTGA  739


> KLLA0E23871g KLLA0E23871g undefined product 7973644:7976085 reverse
Length=2442

 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  810   TGATGAACCATTTCCA  825
             ||||||||||||||||
Sbjct  1293  TGATGAACCATTTCCA  1278


> KLLA0E03807g KLLA0E03807g undefined product 6198703:6200913 reverse
Length=2211

 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  368  TTGGAGAAGAAAATGGTGATT  388
            ||||| ||| |||||||||||
Sbjct  595  TTGGACAAGTAAATGGTGATT  575


> KLLA0D14949g KLLA0D14949g undefined product 5397241:5399877 reverse
Length=2637

 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 29/37 (79%), Gaps = 3/37 (8%)
 Strand=Plus/Plus

Query  926  AGAAGAAGAGAAAGCATTATCTACAAAGATTTGAGAA  962
            ||||||||||||| ||||    | ||||||  |||||
Sbjct  951  AGAAGAAGAGAAATCATT---GAAAAAGATCAGAGAA  984


> KLLA0D13266g KLLA0D13266g undefined product 5275131:5278589 reverse
Length=3459

 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 21/23 (92%), Gaps = 1/23 (4%)
 Strand=Plus/Minus

Query  139  TATAAC-ACTGTATTTTCACATT  160
            |||||| ||| ||||||||||||
Sbjct  939  TATAACCACTATATTTTCACATT  917


> KLLA0D03718g KLLA0D03718g undefined product 4456106:4457338 forward
Length=1233

 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 30/38 (79%), Gaps = 1/38 (2%)
 Strand=Plus/Plus

Query  7    AGAAGAA-AGCAAAAGGTTGAAGAAAAAGTTGACACTA  43
            ||||||  | ||||| | | ||||||||||| | ||||
Sbjct  605  AGAAGAGGATCAAAAAGATTAAGAAAAAGTTAAGACTA  642


> KLLA0C17160g KLLA0C17160g undefined product 3882383:3884878 forward
Length=2496

 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 22/26 (85%), Gaps = 0/26 (0%)
 Strand=Plus/Plus

Query  355   GGAATAAGTAGTTTTGGAGAAGAAAA  380
             ||| || || ||| ||||||||||||
Sbjct  1296  GGAGTATGTTGTTGTGGAGAAGAAAA  1321


> KLLA0C09394g KLLA0C09394g undefined product 3201349:3204903 forward
Length=3555

 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 24/28 (86%), Gaps = 1/28 (3%)
 Strand=Plus/Plus

Query  4     TTCAGAAGAAAGCAAAAG-GTTGAAGAA  30
             ||||||||||||| |||| | ||| |||
Sbjct  2049  TTCAGAAGAAAGCGAAAGTGCTGATGAA  2076


> KLLA0C07623g KLLA0C07623g undefined product 3050118:3051863 forward
Length=1746

 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  205   CATAGTGACAATGAGA  220
             ||||||||||||||||
Sbjct  1624  CATAGTGACAATGAGA  1639


> KLLA0C06490g KLLA0C06490g undefined product 2953213:2953782 reverse
Length=570

 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 21/24 (88%), Gaps = 0/24 (0%)
 Strand=Plus/Minus

Query  583  TTGGCTTTGTTGATAGATTTCAAA  606
            ||| |||||||  |||||||||||
Sbjct  44   TTGACTTTGTTCTTAGATTTCAAA  21


> KLLA0C06182g KLLA0C06182g undefined product 2927705:2932264 forward
Length=4560

 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  12    AAAGCAAAAGGTTGAAGAA  30
             ||||||||||| |||||||
Sbjct  2772  AAAGCAAAAGGATGAAGAA  2790


> KLLA0C03025g KLLA0C03025g undefined product 2655217:2657517 forward
Length=2301

 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  180   AATTCCAACTAAAGAGAAA  198
             ||||||||||||||| |||
Sbjct  2193  AATTCCAACTAAAGATAAA  2211


> KLLA0C02585g KLLA0C02585g undefined product 2612698:2619255 forward
Length=6558

 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 22/26 (85%), Gaps = 0/26 (0%)
 Strand=Plus/Minus

Query  927   GAAGAAGAGAAAGCATTATCTACAAA  952
             ||||||||||||| ||  || |||||
Sbjct  5246  GAAGAAGAGAAAGAATCTTCAACAAA  5221


> KLLA0C02519g KLLA0C02519g undefined product 2608894:2609913 reverse
Length=1020

 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  341   GGAGAAGAGAATTTGGAATAA  361
             ||| ||||||||||| |||||
Sbjct  986   GGATAAGAGAATTTGAAATAA  1006


> KLLA0C00803g KLLA0C00803g undefined product 2442682:2444004 forward
Length=1323

 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  923   CAGAGAAGAAGAGAAAGCA  941
             |||||||||||| ||||||
Sbjct  1256  CAGAGAAGAAGAAAAAGCA  1274


> KLLA0B09262g KLLA0B09262g undefined product 1876893:1879718 forward
Length=2826

 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  949   CAAAGATTTGAGAAGT  964
             ||||||||||||||||
Sbjct  1053  CAAAGATTTGAGAAGT  1038


> KLLA0B06776g KLLA0B06776g undefined product 1656762:1658528 forward
Length=1767

 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  230  TGACTGATTTGGAAAAAGCTT  250
            |||||||||||| ||||| ||
Sbjct  2    TGACTGATTTGGCAAAAGATT  22


> KLLA0A11792g KLLA0A11792g undefined product 1017064:1021095 forward
Length=4032

 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  765   CATCCATCCTTTTATTGAT  783
             |||||||||||| ||||||
Sbjct  2279  CATCCATCCTTTAATTGAT  2261


> KLLA0A06710g KLLA0A06710g undefined product 608103:609374 forward
Length=1272

 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  926   AGAAGAAGAGAAAGCA  941
             ||||||||||||||||
Sbjct  1016  AGAAGAAGAGAAAGCA  1031


> KLLA0A04752g KLLA0A04752g undefined product 425610:426824 reverse
Length=1215

 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 21/24 (88%), Gaps = 0/24 (0%)
 Strand=Plus/Plus

Query  89   CAGTGAAACACCCTGAACCAATCG  112
            ||||||||||||| |||| | |||
Sbjct  497  CAGTGAAACACCCAGAACTATTCG  520


> KLLA0A02255g KLLA0A02255g undefined product 199863:203495 forward
Length=3633

 Score = 30.1 bits (32),  Expect = 6.2
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  879  CAAATATAATCATGAA  894
            ||||||||||||||||
Sbjct  872  CAAATATAATCATGAA  857



Lambda     K      H
   0.634    0.408    0.912 

Gapped
Lambda     K      H
   0.625    0.410    0.780 

Effective search space used: 7362560988


  Database: Kluyveromyces lactis
    Posted date:  Aug 15, 2011  4:06 PM
  Number of letters in database: 7,394,976
  Number of sequences in database:  5,076



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2
Query
>query
ATGTTCAGAAGAAAGCAAAAGGTTGAAGAAAAAGTTGACACTAGCAAATGGGTAAAGATCGAGGTTCCGATCGAATCACCTCCAGACGCAGTGAAACACCCTGAACCAATCGTTTTAGAAGACGAACAATTGAAGAAATATAACACTGTATTTTCACATTTCACTGATACTGATTTACTAATTCCAACTAAAGAGAAAAAAAATCATAGTGACAATGAGATGAAACCATTGACTGATTTGGAAAAAGCTTGGTTGAGTAGAGAATGTTTTATGAGATATTTAAGGGCCACCAAGTGGAATACGCAAGATTGTATCGATAGAATTGTACTCTCTCTTGCTTGGAGAAGAGAATTTGGAATAAGTAGTTTTGGAGAAGAAAATGGTGATTTGCTAACTGCTGACACTGTATCACCGGAGGCTCTGACTGGGAAGGAAGTTGTTTTGGGTTTCGATAACGATTCAAGGCCTATATTGTACTTAAAGCCTGGTAGGCAAAACACAGCAACCTCCCATAGACAAGTCCAGCACCTTGTATATATGCTTGAACGTGTTATTGATTTCATGCCTCCTGGGCAAGATTCATTGGCTTTGTTGATAGATTTCAAAGATTATCCTGATGTTCCAAAGGTTCAAGGTAACTCAAAGATTCCTCCTTTAGGGACCGGTAAAGAGGTTTTACACATTTTACAAACACATTATCCAGAAAGATTAGGGAAAGCATTATTAACTAATATCCCGTGGCTTGCGTGGACCTTTTTGAAGCTCATCCATCCTTTTATTGATCCGTTGACTCGTGAAAAATTGGTTTTTGATGAACCATTTCCAAATTATGTGCCACCTGATCAACTCGAGACGCTTTATGGTGGTAACCTCGACTTCAAATATAATCATGAAGCCTATTGGCCTGTCCTAACTCAAATTGCAGAGAAGAAGAGAAAGCATTATCTACAAAGATTTGAGAAGTTCGGAAAAAAAGTTGGACTGAGTGAATATGATTTAAGAGGTGACCACGATGAGTTGAAATTCCCAATCAACTAA
Documentation
About
API
API tutorial
Alternative representations
jsonJSON
txtTXT

Adhoc 12.7 SciLifeLab tools Per Kraulis (per.kraulis@scilifelab.se)