blastp task: hhh

Status
finished finished
Modified 2014-02-17T21:04:10Z
CPU time (s) 0.8
Size (bytes) 4234
Command blastp -num_descriptions 500 -outfmt 0 -db Kluyveromyces_lactis.faa -num_alignments 250 -seg no -evalue 10.0 -task blastp
Error [none]
Output
BLASTP 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Kluyveromyces lactis
           5,076 sequences; 2,459,916 total letters



Query= query

Length=2586


***** No hits found *****



Lambda     K      H
   0.319    0.120    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 4780728216


  Database: Kluyveromyces lactis
    Posted date:  Aug 15, 2011  4:07 PM
  Number of letters in database: 2,459,916
  Number of sequences in database:  5,076



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Query
>query
ATGAAAATTCTTGTCGAATATTTGGAATCTTTAGAGTGCTATGAAACCCTCAGAAAATCGGATATTCTGATCAATGCTGACTCTAATGGGGTATCCAATCTGTTACTCAGCTGTTTCGCACAAGTTAACAGCAAACATTGCGTACCTCCTGAAATTGAAATATCTTCTACTTTCAGCTCATCGTATCACTGTGAAACTATAGAAACATGCATTCTCTACCTTTTGCACAAGAATTTTACGAATAATATACTGACTTATGGTTACCAGCTGGGAAAGAATTCAGATGTCATGACCAAACTGTTTTGCCGTTCATCGAACATAAGCGTAAGTGTATTGAAATGTAATAGCTGGAGATTGTTCCATCAGCTGGTTGGCACTGACAATTTTGTGAATTTGTTAATCAACTATTCCGTATATTTCAACACCGGCCATTACTTCAGGCAGATAATTGGAACCCCCGCTAACGCGCCTCAGGTGCCACCTGCATGGCTAGATCGGTCGTATAGGAGGGAAAGAAATACTAAGCTAACGATAGATTGGAACTCTGCTCTATATCATAAGATAAGACCGCAAGATTACAAGAATATCATTGAGACTGATCAGGGGCTGTTAATAGCTGAGATTTTTCCGAAAATATCAGAGAGCAGTAAGACACCTCGTTCTCTAAACTTTGCATTGAATAATCTAAAACCCATTTTATATGAGCTCATTCGAGCTCACGAGAGGTTTTCATATAGACACATCATCAATAATATATGCCCCAAATCAGATACTTTCTATTCATCACCCAAAAGTGTCATCAAACTGCTCATTGTATGTGTTAGAAAAACGTTCCCATTGGACCTGTTAGGATCAAATTCAAACTATAGCGTTCTATCAAAAGCGATTGCAATACTTGTCAAAAAACCGCTCCATTCAAAGATACTATTTGATGAATTATGTAAAGGATTGCGTGTGAAAGATGTCAAATGGCTAGAAACAAGGCGGCTTCCAGCTGGTGAACAAACTCAAAAGATTCCATATTATGATGTGAAAAATCGACAAGCGCTTCTTTATAAACTGTTTTTTTGGATCCTTTCCTGTTACGTCCCAAAATTACTATCTACATTTTTCTATGTGACAGAACTATCGTCGACTGTCGATATAGTTTATATTCGTCATGATACTTGGAAAACCATGTCACAACCTTTTTTGAAATCTTACTTTAGGAGGTATTTGCTTGAGAATAAATATTGTTTCCAGCACAGATCTTTCACAGAATCCAAGTTCAATCACAGAAATCTTCGTTTAATACCAAAAAAATCAGGCCTCGATTTCAGAATAATAGCGGTGCCGTGTAAAGGAGTCAATATACAAGAGTTTAACGAGTTTAATGATTACGTTACGAACGCTCTGAAGCCCACCAAGATTATACTGGAAAGATTGAGGATGAGACGAAATACCAAGTTTACAAAAGCATTCTCTCCTTTGGAAATACCCAAGATTGTATTAAGTTATAAGCAAAGGCTACTTTTAAAACATGGTAAAATACCGAATCTCTATCTTTTAAAGTTTGACATTCAATCCTGCTATGATTCAATTCCGGTTCAGAAAGTAATGAAATTGGTAGAGGCTCGGATATGTGAAGAGCAGCAGTTTTTTATTAGATCTCAAGATATACTGACAACTGCTTCCACTCGTCTGAAAAGGCTTCATGCTGTAAATGGAGACATACAATTCCAGGAAAATGATTTAGTAATTGATTCAGTCAAAACTACTGTCTTATCAAAAGAAGACGTTTTAACAGTAGTTAAAATGGAACTCTTCAAAACCAGTATCTTTTACAGAGGCAAGTGTTACTTAAGAAAAGATGGACTCTTTCAAGGAACTCCCTTATCTTCCGTTCTTGTTGATATATTGTATGACGACCTACTTGAATTCTACACCGAGTTTACTGATGAAAATGATTCAGATCCGATGATAATACGGCTGGTGGATGATTTTCTAATAGTTTCAACTTCCAAGAAATACATCGAGCGGCTTAATAATCTGGCTCAAACAGGATTCAAATCTTTCAATACTTATATAAACCCACAAAAAGTCTTGGTTACTTCATCAGAATCTGAAACATCAACAAATGTACCTTTTTGTGCACTGCAGTTAAATCTAAGAACCCTAGAAGTTTGGAAAGACCGCTCATCGTATAATGTCCTAGGAACAGTTTTGGGATCATCTAAGCAACTGTATAATAAATTACTCTGGATCTTTGAGATGAGACTATCTTATAATATGCTGGACGAGCGCTTAAATTCTTGGGAAACGGCTGCAAGGTTCCTGAGAGAAGTTGCGTTAAATGTAATTCAATCGTTCATTGTCCTTTTTAATAGGAAGAAAAGCAGCAGAAGATCTTTCAAACAATTTGTTTTCAACATTTTTCAGCGAATTGATCTTAACCTCTCTTCAGCTAATATGTTCTCGATGGAAAAGTCCGTCGCGTCAAAAGAACTGGTGTTGTCAGTTTTCCTTGAACAATTAAAATTAAGGAAGAACGCATTTGCAGACATTTTGACAAATGTCAGCGATTTGAAACTATTAATAGAGTTTTAA
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Adhoc 12.7 SciLifeLab tools Per Kraulis (per.kraulis@scilifelab.se)