blastp task: ras test

Status
finished finished
Modified 2017-11-22T13:54:52Z
CPU time (s) 0.1
Size (bytes) 33524
Command blastp -num_descriptions 500 -outfmt 0 -db gsASS001Lm.aug.trna.KL.rRNA2.faa -num_alignments 250 -seg no -evalue 10.0 -task blastp
Error [none]
Output
BLASTP 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Kluyveromyces dobzhanskii proteins (Sep 2011)
           4,995 sequences; 2,453,336 total letters



Query= sp|P01112|RASH_HUMAN GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  KLDOg3677                                                            199    1e-52
  KLDOg3623                                                            169    3e-43
  KLDOg4130                                                            112    4e-26
  KLDOg341                                                             106    2e-24
  KLDOg1229                                                            106    2e-24
  KLDOg1747                                                           93.6    1e-20
  KLDOg4512                                                           86.7    2e-18
  KLDOg3692                                                           85.9    3e-18
  KLDOg1945                                                           85.5    4e-18
  KLDOg3582                                                           85.5    4e-18
  KLDOg4370                                                           82.4    4e-17
  KLDOg3696                                                           80.5    1e-16
  KLDOg816                                                            79.7    2e-16
  KLDOg1793                                                           77.8    9e-16
  KLDOg376                                                            77.0    1e-15
  KLDOg3733                                                           76.3    2e-15
  KLDOg4832                                                           75.1    5e-15
  KLDOg77                                                             75.1    5e-15
  KLDOg2966                                                           55.5    4e-09
  KLDOg3508                                                           53.5    2e-08
  KLDOg560                                                            50.8    1e-07
  KLDOg434                                                            38.9    4e-04
  KLDOg2717                                                           37.4    0.001
  KLDOg3810                                                           36.6    0.002
  KLDOg2701                                                           31.2    0.086
  KLDOg2984                                                           30.0    0.20 
  KLDOg912                                                            28.1    0.76 
  KLDOg1595A                                                          26.9    1.7  
  KLDOg1137                                                           26.6    2.0  
  KLDOg4581                                                           26.2    2.7  
  KLDOg1360                                                           26.2    2.7  
  KLDOg4244                                                           25.8    3.4  
  KLDOg445                                                            25.8    4.1  
  KLDOg1280                                                           25.4    4.3  
  KLDOg2184                                                           25.0    5.9  
  KLDOg602                                                            25.0    6.1  
  KLDOg3748                                                           25.0    6.9  
  KLDOg1958                                                           24.6    7.3  
  KLDOg4495                                                           24.6    7.5  
  KLDOg2111                                                           24.6    8.8  
  KLDOg1973                                                           24.3    9.6  


> KLDOg3677
Length=287

 Score =  199 bits (507),  Expect = 1e-52, Method: Compositional matrix adjust.
 Identities = 107/163 (66%), Positives = 128/163 (79%), Gaps = 1/163 (0%)

Query  3    EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE  62
            EYKLVVVG GGVGKSALTIQLIQ+HFVDEYDPTIEDSYRKQ VID +  +LDILDTAGQE
Sbjct  9    EYKLVVVGGGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKQAVIDDKVSILDILDTAGQE  68

Query  63   EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-  121
            EYSAMR+QYMRTGEGFL V+++ +  SFE++  Y +QI RVKD+D VP+ ++GNK DL  
Sbjct  69   EYSAMREQYMRTGEGFLLVYSVTSRTSFEELMTYYQQILRVKDADYVPVFVIGNKSDLED  128

Query  122  ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR  164
             R V   + Q LA+ +  P+ ETSAK    VE++FY LVR IR
Sbjct  129  ERQVSYEEGQTLAKQFNAPFAETSAKQNINVEESFYGLVRLIR  171


> KLDOg3623
Length=259

 Score =  169 bits (427),  Expect = 3e-43, Method: Compositional matrix adjust.
 Identities = 82/181 (46%), Positives = 126/181 (70%), Gaps = 2/181 (1%)

Query  1    MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG  60
            M +YKLVV+GAGGVGKS LT+Q +Q  ++D YDPTIEDSYRK + ID +   L+ILDTAG
Sbjct  1    MRDYKLVVLGAGGVGKSCLTVQFVQGVYLDSYDPTIEDSYRKTMEIDNKVFDLEILDTAG  60

Query  61   QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL  120
              +++AMR+ Y+++G GFL V+++++ +S  ++ + REQ+ R+KDSD VP+VLVGNK DL
Sbjct  61   VAQFTAMRELYIKSGMGFLLVYSVSDRQSLRELLELREQVLRIKDSDRVPIVLVGNKADL  120

Query  121  A-ARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESG  178
               R +   +  +++  +G +P+ E SA  R  V++ F  LVR+I +++L   +  +   
Sbjct  121  QDERVISVEEGIEVSSKWGKVPFYEASALLRSNVDEVFIDLVRQIIRNELESASNGNNGQ  180

Query  179  P  179
            P
Sbjct  181  P  181


> KLDOg4130
Length=214

 Score =  112 bits (279),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 58/161 (37%), Positives = 96/161 (60%), Gaps = 2/161 (1%)

Query  5    KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE  63
            K++++G  GVGKS L ++ +++ F   +  TI   ++ K V I+G+   L + DTAGQE 
Sbjct  22   KILLLGDSGVGKSCLLVRFVEDKFTPTFITTIGIDFKIKTVDINGKRVKLQLWDTAGQER  81

Query  64   YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAAR  123
            +  +   Y R   G + ++ + + ++FE+I Q+   + +   S+DV M+LVGNK D+  R
Sbjct  82   FRTITTAYYRGAMGIVLIYDVTDERTFENIRQWFSTVNQ-HASEDVVMLLVGNKKDMETR  140

Query  124  TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR  164
            TV   Q + LA+  GIP+IE SAK    V + F+TL + I+
Sbjct  141  TVSFEQGEALAKELGIPFIEASAKDDTNVSEIFFTLAKLIQ  181


> KLDOg341
Length=190

 Score =  106 bits (265),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 60/183 (33%), Positives = 103/183 (57%), Gaps = 6/183 (3%)

Query  5    KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-----LDILDTA  59
            K++V+G+  VGK+ L +QL ++HFV+ Y PTIE+ +  + V+           LDI+DT+
Sbjct  7    KIIVLGSRNVGKTTLLVQLTESHFVESYYPTIENQFIHEFVLKKPNGTELKFNLDIVDTS  66

Query  60   GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD  119
            GQ+E+S +  + M    G + ++++ N  SFE +   R+++  +    ++PMVLVGNK D
Sbjct  67   GQDEFSMINAKSMLGVAGCILMYSVANRHSFEIVELIRDKMLDMLGLLELPMVLVGNKID  126

Query  120  LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGP  179
            L  R V  ++ +DLA+     ++E   K   G+E  F TL+ +I  ++         S  
Sbjct  127  L-DRQVSFKEGEDLAKRLNCGFVEICVKQGSGIEKPFKTLIHKIEGYEDGSGKGDQGSAD  185

Query  180  GCM  182
            GC+
Sbjct  186  GCV  188


> KLDOg1229
Length=204

 Score =  106 bits (264),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 57/164 (35%), Positives = 97/164 (60%), Gaps = 3/164 (1%)

Query  4    YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE  62
            +KL+++G  GVGKS L ++   + + ++Y  TI   ++ K V +DG+T  L I DTAGQE
Sbjct  9    FKLLLIGDSGVGKSCLLLRFADDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE  68

Query  63   EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-  121
             +  +   Y R   G + V+ + + +SF ++  + ++I R   +  V  +LVGNK DL  
Sbjct  69   RFRTITSSYYRGSHGIIIVYDVTDQESFNNVKTWLQEIDRFGTA-GVLKLLVGNKNDLTD  127

Query  122  ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ  165
             + V++  A++ A S GIP+IETSA     VE+ F  + ++I++
Sbjct  128  KKVVDTEVAKEFADSIGIPFIETSALDSSNVEETFLIMTKQIKE  171


> KLDOg1747
Length=207

 Score = 93.6 bits (231),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 54/170 (32%), Positives = 95/170 (56%), Gaps = 8/170 (4%)

Query  5    KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVI-DGETCLLDILDTAGQE  62
            K++++G  GVGK++L  + + + +  +Y  TI  D   K+VV+ D +   + + DTAGQE
Sbjct  9    KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVVVNDDKVATMQVWDTAGQE  68

Query  63   EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCD  119
             + ++   + R  +  + V+ + N KSF+++  +R++      V   +  P V++ NK D
Sbjct  69   RFQSLGVAFYRGADCCVLVYDVTNAKSFDNVKSWRDEFLVHANVASPETFPFVILANKVD  128

Query  120  L--AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQH  166
            +  + + V SR AQ+LA+S G +P   TSAK    V+DAF  + R   Q 
Sbjct  129  VEESKKVVSSRSAQELAKSLGNVPLFFTSAKDSINVQDAFEEIARSALQQ  178


> KLDOg4512
Length=263

 Score = 86.7 bits (213),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 57/191 (30%), Positives = 100/191 (53%), Gaps = 7/191 (3%)

Query  1    MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA  59
            + +YK+V +G  GVGK++L  + + + F D Y  TI  D   K + +D +T  L + DTA
Sbjct  60   LRKYKIVFLGEQGVGKTSLITRFMYDTFDDNYQATIGIDFLSKTMYLDDKTIRLQLWDTA  119

Query  60   GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD  119
            GQE + ++   Y+R     + V+ + N KSFE I ++ E +K  +  ++V +V+VGNK D
Sbjct  120  GQERFRSLIPSYIRDSHVAIVVYDVTNRKSFEYIDKWIEDVKMERGEENVILVIVGNKSD  179

Query  120  -LAARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPD--  175
             L  R V + + +  +       +IETS K    V+  F  + + + + +  +  P D  
Sbjct  180  LLEERQVTTEEGERKSTVLNAKLFIETSTKAGFNVKTLFKKIAKLLPEFQDAQTTPLDND  239

Query  176  --ESGPGCMSC  184
              +  PG ++ 
Sbjct  240  KNDKKPGIINI  250


> KLDOg3692
Length=208

 Score = 85.9 bits (211),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 50/168 (30%), Positives = 88/168 (53%), Gaps = 6/168 (3%)

Query  1    MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTA  59
            +T  KLV++G   VGKS++ ++ + N F +  +PTI  ++  Q V +   T   +I DTA
Sbjct  5    VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVNMADHTIKFEIWDTA  64

Query  60   GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD  119
            GQE ++++   Y R  +  L V+ +   +SF     + +++   + S  + + LVGNK D
Sbjct  65   GQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHE-QASKGIIIALVGNKMD  123

Query  120  LAA----RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI  163
            L      R V   +A+ L+    + + ETSAK+   V + F  +  +I
Sbjct  124  LLESEEDRKVAREEAEKLSEEKNLLFFETSAKSGDNVNEVFLAIGEKI  171


> KLDOg1945
Length=255

 Score = 85.5 bits (210),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 59/188 (32%), Positives = 93/188 (50%), Gaps = 32/188 (17%)

Query  1    MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI------DGETCL--  52
            M   K V+VG G VGK++L I    N F  +Y PT+ D+Y   + +      D E  +  
Sbjct  1    MRSIKCVIVGDGAVGKTSLLISYTTNTFPQDYIPTVFDNYSTTIALPDPNSRDSEPQVFK  60

Query  53   LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH-QYREQIKRVKDSDD---  108
            L++ DTAGQEEY  +R       + FL  F++N   SFE++H ++  +IK   + ++   
Sbjct  61   LNLWDTAGQEEYDRLRPLSYPQTDIFLICFSVNEPNSFENVHDKWFPEIKHNTNFENLDL  120

Query  109  ------VPMVLVGNKCDL-------------AARTVESRQAQDLARSYGI-PYIETSAKT  148
                  +P++L+G K DL              +  V  +Q Q+L    G+  Y+E SA T
Sbjct  121  YHQSGRLPILLIGTKADLRDDDHERDRLQESNSDFVSQQQIQELVNKLGLMGYVECSAAT  180

Query  149  RQGVEDAF  156
            + GV + F
Sbjct  181  QAGVREVF  188


> KLDOg3582
Length=191

 Score = 85.5 bits (210),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 54/171 (32%), Positives = 86/171 (51%), Gaps = 17/171 (9%)

Query  1    MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG  60
            M   K VV+G G VGK+ L I    N F  +Y PT+ D+Y   V+I  E   L + DTAG
Sbjct  1    MQTLKCVVIGDGAVGKTCLLISYTTNQFPADYVPTVFDNYAVTVMIGDEPYTLGLFDTAG  60

Query  61   QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCD  119
            QE+Y  +R     + + FL  F++ +  SFE++  ++  ++        VP ++VG + D
Sbjct  61   QEDYDRLRPLSYPSTDVFLVCFSVISPPSFENVKEKWFPEVHH--HCPGVPCLIVGTQID  118

Query  120  L-------------AARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAF  156
            L               R +   Q + LAR    + Y+E SA T++G+++ F
Sbjct  119  LRDDKVIIEKLQRQRLRPITPEQGERLARELRAVKYVECSALTQRGLKNVF  169


> KLDOg4370
Length=217

 Score = 82.4 bits (202),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 55/164 (34%), Positives = 95/164 (58%), Gaps = 10/164 (6%)

Query  5    KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEE  63
            K+VVVG G VGK++L I   Q  F ++Y PTI ++Y   +   +G+   L + DTAGQEE
Sbjct  33   KIVVVGDGAVGKTSLLISYTQGKFPEDYVPTIFENYITNLEGPNGKIVELALWDTAGQEE  92

Query  64   YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDLAA  122
            YS +R       +  +  +A+N+  SF +I + +  ++K      +VP+++VG K DL A
Sbjct  93   YSRLRPLSYTDVDILMICYAVNSNVSFYNIEEMWVPEVKHF--CPEVPIMIVGLKSDLYA  150

Query  123  R-----TVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV  160
                   V+S +A+++A+  G   +++ S+K++Q V + F T +
Sbjct  151  EDNISDFVDSFEAEEMAKRVGAFVHLQCSSKSQQKVREVFDTAI  194


> KLDOg3696
Length=187

 Score = 80.5 bits (197),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 55/164 (34%), Positives = 86/164 (53%), Gaps = 9/164 (5%)

Query  5    KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY  64
            KLV++G G  GK++L        F +EY PT+ ++Y     +DG    L + DTAGQEEY
Sbjct  9    KLVIIGDGACGKTSLLYVFTLGQFPEEYHPTVFENYVTDCRVDGIKVQLTLWDTAGQEEY  68

Query  65   SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAAR  123
              +R       +  +  FAI++ +S  +  +++ E++ R   +   P+VLVG K DL + 
Sbjct  69   ERLRPFSYSKADIIIIGFAIDDPESLGNARNKWSEEVLRYCPA--APVVLVGLKKDLRSP  126

Query  124  -----TVESRQAQDLARSYGI-PYIETSAKTRQGVEDAFYTLVR  161
                  V   QA+ +A++ G   YIE SA T + V+D F    R
Sbjct  127  ENEHLMVTREQAEQVAKAIGAKKYIECSALTGENVDDVFEVATR  170


> KLDOg816
Length=208

 Score = 79.7 bits (195),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 59/172 (35%), Positives = 82/172 (48%), Gaps = 17/172 (9%)

Query  5    KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY  64
            KLV+VG G  GK+ L I   +  F   Y PT+ D+Y   V +DG    L + DTAGQE+Y
Sbjct  14   KLVIVGDGACGKTCLLIVFAKGKFPQVYVPTVFDNYVADVEVDGRRVELALWDTAGQEDY  73

Query  65   SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL---  120
              +R          L  ++I+   S E++ +  + I  V      VP++LVG K DL   
Sbjct  74   DRLRPLSYPDSNVVLICYSIDLPDSLENVME--KWISEVLHFCQGVPIILVGCKADLRND  131

Query  121  ----------AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR  161
                        + V   QAQ++A   G + YIE SAKT  GV + F    R
Sbjct  132  PQVVEELRAQGLQPVSQAQAQEVADQIGAVDYIECSAKTGYGVREVFEAATR  183


> KLDOg1793
Length=207

 Score = 77.8 bits (190),  Expect = 9e-16, Method: Compositional matrix adjust.
 Identities = 50/167 (30%), Positives = 85/167 (51%), Gaps = 12/167 (7%)

Query  1    MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEY-DPTIEDSYRKQVV-----IDGETCLLD  54
            M ++KLV++G   VGKS++  + +++ F DEY + TI  ++  Q +      D +    +
Sbjct  1    MLQFKLVLLGDSSVGKSSIVHRFVKDSF-DEYRESTIGAAFLSQTIKLSEQYDEQVLKFE  59

Query  55   ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV  114
            I DTAGQE Y ++   Y R     L V+ +    S      + +++K     D + + LV
Sbjct  60   IWDTAGQERYKSLAPMYYRNANAALVVYDVTEPGSLPKAKLWVDELKEKVSDDKLIICLV  119

Query  115  GNKCDLAART-----VESRQAQDLARSYGIPYIETSAKTRQGVEDAF  156
            GNK DLAA       V+  +A++ A+   + + + SAKT + V   F
Sbjct  120  GNKLDLAAEKESSSLVDESEAREFAKDNNLLFHQVSAKTGENVIKVF  166


> KLDOg376
Length=211

 Score = 77.0 bits (188),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 54/175 (31%), Positives = 90/175 (52%), Gaps = 4/175 (2%)

Query  14   VGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYM  72
            +GKS L  +   N F  +   TI   +  + + ++G+     I DTAGQE Y A+   Y 
Sbjct  16   IGKSNLLSRFTANEFNLDSKTTIGVEFATRTIEVEGKKIKAQIWDTAGQERYRAITTAYY  75

Query  73   RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQ  131
            R   G L V+ I  + S+E+ + +  ++K+  D ++V + L+GNK DL   R V + +A+
Sbjct  76   RAAVGALIVYDITKSSSYENCNHWLAELKQNAD-ENVAVGLIGNKSDLDHKRAVPTDEAR  134

Query  132  DLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH-KLRKLNPPDESGPGCMSCK  185
            + A+   + + ETSA     V++AF  L+  I Q     +L+  D SG    + K
Sbjct  135  NYAQENQLLFTETSALNADNVDEAFRALITAIYQMISKNQLDLNDTSGNNANAPK  189


> KLDOg3733
Length=223

 Score = 76.3 bits (186),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 55/188 (30%), Positives = 93/188 (50%), Gaps = 32/188 (17%)

Query  3    EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE  62
            E K+V++G G  GK++L     + +F   Y+PTI ++Y   + +D +   L + DTAGQE
Sbjct  14   ERKIVILGDGACGKTSLLNVFTRGYFPKVYEPTIFENYIHDIFVDSQHISLSLWDTAGQE  73

Query  63   EYSAMRD-QYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL  120
            E+  +R   Y  T    LC F++++  S E++ H++  +I      + V +VLV  KCDL
Sbjct  74   EFDRLRSLSYSDTHTIMLC-FSVDSRDSLENVQHKWVGEI--ADHCEGVKLVLVALKCDL  130

Query  121  -------------AARTVESRQAQ-------------DLARSYG-IPYIETSAKTRQGVE  153
                            ++++R +              D+A+  G + Y+E SAK  +GV 
Sbjct  131  RNLEEFGNESTAITPGSIQNRSSNAKDNGLISYEEGLDMAKKIGALRYLECSAKMNRGVN  190

Query  154  DAFYTLVR  161
            +AF    R
Sbjct  191  EAFTEAAR  198


> KLDOg4832
Length=214

 Score = 75.1 bits (183),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 44/161 (28%), Positives = 82/161 (51%), Gaps = 4/161 (2%)

Query  4    YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE  62
            +KLV+VG GG GK+    + +   F  +Y  TI  + +      +      D+ DTAGQE
Sbjct  8    FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLAFYTNFGEIKFDVWDTAGQE  67

Query  63   EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA  122
            ++  +RD Y    +  + +F + +  +++++  +   + RV   +++P+VL GNK D+  
Sbjct  68   KFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKE  125

Query  123  RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI  163
            R V+++      R   + Y + SAK+    E  F  L R++
Sbjct  126  RKVKAKTIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL  165


> KLDOg77
Length=214

 Score = 75.1 bits (183),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 44/161 (28%), Positives = 82/161 (51%), Gaps = 4/161 (2%)

Query  4    YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE  62
            +KLV+VG GG GK+    + +   F  +Y  TI  + +      +      D+ DTAGQE
Sbjct  8    FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLAFYTNFGEIKFDVWDTAGQE  67

Query  63   EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA  122
            ++  +RD Y    +  + +F + +  +++++  +   + RV   +++P+VL GNK D+  
Sbjct  68   KFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKE  125

Query  123  RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI  163
            R V+++      R   + Y + SAK+    E  F  L R++
Sbjct  126  RKVKAKTIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL  165


> KLDOg2966
Length=384

 Score = 55.5 bits (132),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 36/124 (30%), Positives = 59/124 (48%), Gaps = 6/124 (4%)

Query  63   EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD-LA  121
            +YS +R+  +   +GF+  F   N  +  D+  Y   I R K  DDVP+++ GNK D + 
Sbjct  138  DYSDIRNLQLNQADGFILCFDTTNPATLADMLLYHRIITRQK-GDDVPIIVCGNKIDCVH  196

Query  122  ARTVESRQAQDLARSYGI----PYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDES  177
             R V   +A  +    G+     Y ETSA     V + FY ++  I + +  K+   + +
Sbjct  197  ERKVSEDEAIGICEEMGVDFDTAYFETSAMENINVSEVFYAILSLIEKQRPIKVRESECN  256

Query  178  GPGC  181
             P C
Sbjct  257  HPKC  260


> KLDOg3508
Length=211

 Score = 53.5 bits (127),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 50/181 (28%), Positives = 81/181 (45%), Gaps = 28/181 (15%)

Query  5    KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGET------CLLDILD  57
            KLV++G   VGKS +  +     F  + + TI  ++  K++  +G           +I D
Sbjct  11   KLVLLGESSVGKSTIVTRFTTGEF-HKNNATIGAAFTTKELEWEGSEDRIKRRVKFEIWD  69

Query  58   TAGQEEYSAMRDQYMRTGEGFLCVFAI------NNTKSF-EDIHQYREQIKRVKDSDDVP  110
            TAGQE Y ++   Y R  +  L VF +      N  +S+ ++++ Y E  K+    D V 
Sbjct  70   TAGQERYRSLAPMYYRNTDVALVVFDVTQPASKNKAQSWIDELNNYLEDYKK----DSVQ  125

Query  111  MVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK  170
            + +VGNK DL  +   +              I  SAKT +GV D F  +   +   K + 
Sbjct  126  VRVVGNKTDLIDKETITNWKD---------AILVSAKTGEGVNDLFLRIAESLPLDKFKL  176

Query  171  L  171
            L
Sbjct  177  L  177


> KLDOg560
Length=223

 Score = 50.8 bits (120),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 31/117 (27%), Positives = 58/117 (50%), Gaps = 3/117 (2%)

Query  5    KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET-CLLDILDTAGQEE  63
            K+ ++G   VGK++L ++ +QN F +EY  T+   Y ++ V+ G T  +  I+D  GQ E
Sbjct  18   KVGLIGDAQVGKTSLMVKYVQNVFDEEYTQTLGVHYLERKVVLGSTDVIFSIMDLGGQRE  77

Query  64   YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL  120
            +  M           + +F +   ++   + ++  Q +   D+     +LVG K DL
Sbjct  78   FINMLPLVSEGAVAIVFLFDLTRPETLNSVKEWYRQARGFNDT--AISILVGTKYDL  132


> KLDOg434
Length=190

 Score = 38.9 bits (89),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 31/141 (22%), Positives = 61/141 (44%), Gaps = 6/141 (4%)

Query  5    KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY  64
            KL+ +G    GK+ L + +++N  +    PT   +  +  + + +    D+    G  + 
Sbjct  25   KLLFLGLDNAGKTTL-LHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDL---GGHLQA  80

Query  65   SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AA  122
              +   Y     G + +    + + FE+     + + ++K+ D+VP  ++GNK D   A 
Sbjct  81   RRLWKDYFPEVNGIVFLVDAADPERFEEARIELDALFQIKELDNVPFAVLGNKIDFPTAV  140

Query  123  RTVESRQAQDLARSYGIPYIE  143
               E R A  L  + G   IE
Sbjct  141  SETELRAALGLMNTTGYTKIE  161


> KLDOg2717
Length=256

 Score = 37.4 bits (85),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 28/121 (24%), Positives = 55/121 (46%), Gaps = 2/121 (1%)

Query  3    EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE  62
            +  + VVG    GK+  T  L    F  +  PT+  +  K V +   T L  I D AGQ 
Sbjct  23   QLSIAVVGLQNSGKTTFTNLLAGKEFAVDTIPTLGINV-KNVKLPNRTNL-TIYDLAGQT  80

Query  63   EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA  122
             +  + ++  +  +  + +  I++  ++E        +    + + VP++++GNK DL  
Sbjct  81   RFQKLWERCFQQADLLVFMIDISDLTTWEQAKNKLHDVIIATNLEHVPILILGNKKDLLP  140

Query  123  R  123
            +
Sbjct  141  K  141


> KLDOg3810
Length=181

 Score = 36.6 bits (83),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 34/143 (24%), Positives = 63/143 (45%), Gaps = 14/143 (9%)

Query  3    EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE  62
            E ++++VG  G GK+ +  +L     V    PTI  +      ++ +     + D  GQ+
Sbjct  17   EMRILMVGLDGAGKTTVLYKLKLGEVVTTI-PTIGFNVE---TVEYKNISFTVWDVGGQD  72

Query  63   EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCD  119
            +   +   Y R  EG + V   N+      I   RE ++R+ + D++    +++  NK D
Sbjct  73   KLRPLWRHYFRNTEGIIFVVDSNDRSR---ISVAREVLQRMLNEDEIRNAALLVFANKQD  129

Query  120  LAARTVESRQAQDLARSYGIPYI  142
            L     E+  A +L    G+  I
Sbjct  130  LP----EAMPAAELTEKLGLHSI  148


> KLDOg2701
Length=659

 Score = 31.2 bits (69),  Expect = 0.086, Method: Compositional matrix adjust.
 Identities = 34/130 (27%), Positives = 55/130 (43%), Gaps = 6/130 (4%)

Query  8    VVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSA  66
            V+G G  GKS+L    +   F D Y PTI        + + G      IL   G++E   
Sbjct  451  VLGKGNSGKSSLLESFLGRQFSDAYSPTIRPKVSVNSLELKGGKQYYLILQEFGEQETPI  510

Query  67   MRDQYMRTGEGFLCV-FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTV  125
            + ++        LC+ +  ++ +SF       E+   +K   ++P+V V  K DL  +  
Sbjct  511  LENRGKLDECDVLCMCYDSSDPESFSYTVALIERYDYLK---ELPIVFVALKADLDKQQQ  567

Query  126  ESR-QAQDLA  134
             S  Q  D A
Sbjct  568  RSHIQPDDFA  577


> KLDOg2984
Length=337

 Score = 30.0 bits (66),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 12/28 (43%), Positives = 18/28 (65%), Gaps = 0/28 (0%)

Query  3   EYKLVVVGAGGVGKSALTIQLIQNHFVD  30
           ++ ++VVG  G+GKS L   L  +H VD
Sbjct  45  QFNVMVVGHSGLGKSTLVNTLFASHLVD  72


> KLDOg912
Length=199

 Score = 28.1 bits (61),  Expect = 0.76, Method: Compositional matrix adjust.
 Identities = 14/71 (20%), Positives = 33/71 (47%), Gaps = 3/71 (4%)

Query  52   LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT---KSFEDIHQYREQIKRVKDSDD  108
            +  I+D +GQ+ +  + D Y          + ++ +   +  E +++ + +      S D
Sbjct  69   IWKIIDVSGQKSFRYLWDSYFNKENVHAIAYVVDTSDPDRLQESVNELKARYTSNPSSVD  128

Query  109  VPMVLVGNKCD  119
            +P+ +V NK D
Sbjct  129  IPIAIVLNKAD  139


> KLDOg1595A
Length=297

 Score = 26.9 bits (58),  Expect = 1.7, Method: Compositional matrix adjust.
 Identities = 12/33 (37%), Positives = 17/33 (52%), Gaps = 0/33 (0%)

Query  86   NTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC  118
            N   + +IHQY E   R  D+ DV ++   N C
Sbjct  177  NLPKYINIHQYWEFFTRGTDTSDVNVMKFANAC  209


> KLDOg1137
Length=391

 Score = 26.6 bits (57),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 23/85 (28%), Positives = 34/85 (40%), Gaps = 19/85 (22%)

Query  56   LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG  115
            LD AG++    + D   R G      +A N T  FE + Q +E++  V            
Sbjct  181  LDVAGRDVTRHLIDLLSRRG------YAFNRTADFETVRQIKEKLCYV------------  222

Query  116  NKCDLAARTVESRQAQDLARSYGIP  140
               DL   T  +R+   L  SY +P
Sbjct  223  -SYDLDLDTKLARETTTLVESYELP  246


> KLDOg4581
Length=725

 Score = 26.2 bits (56),  Expect = 2.7, Method: Compositional matrix adjust.
 Identities = 14/38 (37%), Positives = 23/38 (61%), Gaps = 7/38 (18%)

Query  17  SALTIQLIQNHFVDEY-----DPTIEDSYRKQVVIDGE  49
           SA T+  +QN F++E+     DP   DS R  +++DG+
Sbjct  58  SAATV--MQNTFLEEFMSSSNDPMTADSLRGAILLDGD  93


> KLDOg1360
Length=427

 Score = 26.2 bits (56),  Expect = 2.7, Method: Compositional matrix adjust.
 Identities = 10/18 (56%), Positives = 14/18 (78%), Gaps = 0/18 (0%)

Query  6   LVVVGAGGVGKSALTIQL  23
           +V+ G  GVGKS L+IQ+
Sbjct  17  IVIAGTTGVGKSDLSIQI  34


> KLDOg4244
Length=669

 Score = 25.8 bits (55),  Expect = 3.4, Method: Compositional matrix adjust.
 Identities = 15/39 (39%), Positives = 23/39 (59%), Gaps = 1/39 (2%)

Query  119  DLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY  157
            D+  RT +S   Q + R  G+ ++ET+ +T   VEDA Y
Sbjct  172  DMLGRT-QSITTQTIRRVNGMEFVETTTQTAGPVEDAQY  209


> KLDOg445
Length=639

 Score = 25.8 bits (55),  Expect = 4.1, Method: Composition-based stats.
 Identities = 22/99 (23%), Positives = 46/99 (47%), Gaps = 9/99 (9%)

Query  61   QEEYSAMRDQYMRTGE---GFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK  117
            +EE  ++ ++ + T E       + A  N KS+  I ++++ I  +    DVP  L G  
Sbjct  245  KEEAKSLLNEIISTSEEQNDLTSIIAKTNFKSYASISKFKDNIPLILRELDVPG-LTGKH  303

Query  118  CDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF  156
              ++      +Q Q +A +  +  + ++ K  +G  +AF
Sbjct  304  SQIS-----YQQQQAIASNLELLKVFSNGKIAKGKTNAF  337


> KLDOg1280
Length=568

 Score = 25.4 bits (54),  Expect = 4.3, Method: Composition-based stats.
 Identities = 15/44 (35%), Positives = 22/44 (50%), Gaps = 10/44 (22%)

Query  5    KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG  48
            K+ VVG  G GKS LT+ L +          I + ++  + IDG
Sbjct  342  KIGVVGRTGAGKSTLTLALFR----------ILEPFKGSITIDG  375


> KLDOg2184
Length=290

 Score = 25.0 bits (53),  Expect = 5.9, Method: Compositional matrix adjust.
 Identities = 11/17 (65%), Positives = 14/17 (83%), Gaps = 0/17 (0%)

Query  6   LVVVGAGGVGKSALTIQ  22
           LV+ G GGVGKS++T Q
Sbjct  22  LVLSGKGGVGKSSVTTQ  38


> KLDOg602
Length=1203

 Score = 25.0 bits (53),  Expect = 6.1, Method: Compositional matrix adjust.
 Identities = 18/80 (23%), Positives = 33/80 (42%), Gaps = 13/80 (16%)

Query  98   EQIKRVKDSDDVPMVLVGNKCDLAART----VESRQAQDLARSYGIPYIETSAKTRQGVE  153
            E    V+D   +P++L  N+C L   +    V++++  D    Y I           G+E
Sbjct  150  ETFTEVRDCGGLPIMLKSNRCHLNKMSPHELVQNKEESDEFGGYFI---------VNGIE  200

Query  154  DAFYTLVREIRQHKLRKLNP  173
                 L+ + R H +  + P
Sbjct  201  KLIRMLIVQRRNHPMAIIRP  220


> KLDOg3748
Length=775

 Score = 25.0 bits (53),  Expect = 6.9, Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 28/68 (42%), Gaps = 1/68 (1%)

Query  56   LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK-SFEDIHQYREQIKRVKDSDDVPMVLV  114
            L   G+   +    +Y+     +  VF + NT+  F   H  +EQ  +  D DD    ++
Sbjct  175  LPATGKSFITNKLSRYLNYSMYYCKVFNVGNTRRQFAKEHNMKEQDSKFFDPDDEHSKML  234

Query  115  GNKCDLAA  122
             NK  L  
Sbjct  235  RNKWALGT  242


> KLDOg1958
Length=364

 Score = 24.6 bits (52),  Expect = 7.3, Method: Compositional matrix adjust.
 Identities = 33/162 (21%), Positives = 66/162 (41%), Gaps = 25/162 (15%)

Query  1    MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG  60
             T + L  +  GG+G      + + NH  D+Y   I+ S       D E     +LDT  
Sbjct  111  FTYHNLTFMHNGGIGNFHRIKRKLLNHIDDKYLLMIQGS------TDSECAFALMLDTLE  164

Query  61   QEEYSAMRDQ------------YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD  108
            +  Y+   +Q            Y RT    +   A+   K+ + + Q+ ++     D+ +
Sbjct  165  RMGYNPAAEQQREKVKRSAKGSYKRTSSHVILREAL--LKTIDLLKQWTQEAAESSDAFE  222

Query  109  VPMV---LVGNKCDLAARTVESR--QAQDLARSYGIPYIETS  145
              ++   +   +C + +R + S   +A  L  S G  ++E++
Sbjct  223  PSLLNFAVTDGECVVISRYITSSTDEAPSLHFSCGSSFVESA  264


> KLDOg4495
Length=1507

 Score = 24.6 bits (52),  Expect = 7.5, Method: Compositional matrix adjust.
 Identities = 15/44 (35%), Positives = 24/44 (55%), Gaps = 10/44 (22%)

Query  5     KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG  48
             K+ +VG  G GKS+LT+ L +          I ++   ++VIDG
Sbjct  1295  KIGIVGRTGAGKSSLTLALFR----------IIEAAAGRIVIDG  1328


> KLDOg2111
Length=605

 Score = 24.6 bits (52),  Expect = 8.8, Method: Composition-based stats.
 Identities = 13/31 (42%), Positives = 21/31 (68%), Gaps = 4/31 (12%)

Query  35  TIEDSYRKQVVIDG-ETCLLDILDTAGQEEY  64
           TI+ ++  Q V+ G ET   D+LDT G+E++
Sbjct  26  TIDSTHSLQSVLQGFET---DVLDTVGEEDF  53


> KLDOg1973
Length=453

 Score = 24.3 bits (51),  Expect = 9.6, Method: Compositional matrix adjust.
 Identities = 15/54 (28%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query  111  MVLVG-NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI  163
            +++VG + C   A  +  +  +DLA  +   +    + T   V+ AF  L+REI
Sbjct  379  IIIVGTHMCHELASPLMLQWGKDLALQWNCGFAALDSMTDDNVDVAFAMLLREI  432



Lambda     K      H
   0.319    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 216107606


  Database: Kluyveromyces dobzhanskii proteins (Sep 2011)
    Posted date:  Sep 16, 2011  10:27 AM
  Number of letters in database: 2,453,336
  Number of sequences in database:  4,995



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Query
>sp|P01112|RASH_HUMAN GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG
QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL
AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGPG
CMSCKCVLS
Documentation
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Adhoc 12.7 SciLifeLab tools Per Kraulis (per.kraulis@scilifelab.se)