blastn task: [no title]

Status
finished finished
Modified 2016-05-16T12:54:24Z
CPU time (s) 0.0
Size (bytes) 11737
Command blastn -num_descriptions 500 -outfmt 0 -dust no -db gsASS001Lm.aug.trna.KL.rRNA2.fna -num_alignments 250 -evalue 10.0 -task blastn
Error [none]
Output
BLASTN 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: Kluyveromyces dobzhanskii (Sep 2011)
           1 sequences; 10,741,898 total letters



Query= query

Length=876
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  gsASS001Lm                                                          1011    0.0  


> gsASS001Lm
Length=10741898

 Score = 1011 bits (1120),  Expect = 0.0
 Identities = 746/870 (86%), Gaps = 0/870 (0%)
 Strand=Plus/Minus

Query  7        CAACAAGCAAAAGCTTGCCGATTTGATCAAGAAGTTGTACGACGGCGAAGACATCATCGA  66
                |||||||| ||  ||||||||||||||| | ||||||||||| || |||||| | ||| |
Sbjct  8762521  CAACAAGCTAAGACTTGCCGATTTGATCGAAAAGTTGTACGAGGGAGAAGACGTTATCAA  8762462

Query  67       AAGAGACCACATCAGAAACACCTTGTTCGACATCCAAGTGAAGCGTATTCACGAGTACAA  126
                 || || |||||||||||||| ||||||||||| || ||||| ||||| |||||||||||
Sbjct  8762461  CAGGGATCACATCAGAAACACTTTGTTCGACATTCAGGTGAAACGTATCCACGAGTACAA  8762402

Query  127      GCGTCAACAGTTGAACATCTTTGGGTGCATCTACAGATACTTGCGGATCAAGGAGTTGTT  186
                |||||||||  ||||||||||||||||||| || ||||| ||| | |||||  || ||||
Sbjct  8762401  GCGTCAACAAATGAACATCTTTGGGTGCATTTATAGATATTTGAGTATCAAAAAGCTGTT  8762342

Query  187      GGCTGAAGGTGTCCCAATTGCCGAAGTGGAAAAGAAGTACCCAAGAAAGGTGTCCATCTT  246
                  | || ||||| |||||   |||||||||||||||||||||||||| ||||||||||||
Sbjct  8762341  ATCGGAGGGTGTTCCAATCAACGAAGTGGAAAAGAAGTACCCAAGAAGGGTGTCCATCTT  8762282

Query  247      TGGTGGTAAGAGTGCTCCAGGTTACTACATGGCCAAGACGATTATCAAGTTGATCAACAG  306
                 ||||||||||| || || || |||||||||||||||  ||| |||||||||||||||||
Sbjct  8762281  CGGTGGTAAGAGCGCACCCGGCTACTACATGGCCAAGTTGATCATCAAGTTGATCAACAG  8762222

Query  307      TGTCAGCGACGTGGTGAACCACGACAAGGAGATCGGGAACATCTTCAAGGTCGTGTTCAT  366
                |||||| ||||| ||||| |||||| | ||||||   |||||||| || ||||| |||||
Sbjct  8762221  TGTCAGTGACGTTGTGAATCACGACGAAGAGATCAACAACATCTTGAAAGTCGTATTCAT  8762162

Query  367      TCCAGACTACAACGTCTCCAAGGCAGAAATCATCATTCCTGCCAGTGACTTGAGTGAGCA  426
                 ||||| ||||||||||||||||| || |  || || || |||||||||||||| |||||
Sbjct  8762161  CCCAGATTACAACGTCTCCAAGGCTGAGACAATTATCCCAGCCAGTGACTTGAGCGAGCA  8762102

Query  427      CATCTCTACCGCCGGTACCGAGGCCTCTGGTACATCCAACATGAAGTTTGTCATGAACGG  486
                |||||| ||||| ||||| || || || || || |||||||||||||| || ||||| ||
Sbjct  8762101  CATCTCCACCGCTGGTACTGAAGCGTCCGGCACTTCCAACATGAAGTTCGTGATGAATGG  8762042

Query  487      TGGGTTGATCATTGGTACCGTGGACGGTGCCAACGTCGAGATCACCAGAGAAATTGGAGA  546
                |||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct  8762041  TGGGTTGATCATCGGTACCGTTGACGGTGCCAACGTCGAGATCACCAGAGAAGTTGGAGA  8761982

Query  547      GGACAACATCTTCTTGTTTGGTAACTTGGCCGAGAACGTTGACGAGTTGAGATACCAACA  606
                |||||||||||||||||| || ||||||||||| ||||| || ||||| |||||||||||
Sbjct  8761981  GGACAACATCTTCTTGTTCGGGAACTTGGCCGAAAACGTGGATGAGTTAAGATACCAACA  8761922

Query  607      CCAGTACCACGCCAAGCCATTGCCAAAGGAGTTGGAGGAAGTGTTGCAACTGATTGAGCG  666
                |||||||||| | ||||| |||||  | || |||||  |||| |||||| |  | ||| |
Sbjct  8761921  CCAGTACCACCCAAAGCCCTTGCCCGAAGAATTGGAACAAGTCTTGCAAGTCGTCGAGAG  8761862

Query  667      CGGCACTTTCGACGGTGACTTCAAGCCTTTGGTCGACTCTATCAGACACCACGGTGACTA  726
                |||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  8761861  CGGCACCTTCGATGGAGACTTCAAGCCTTTGGTCGACTCCATCAGACACCACGGTGACTA  8761802

Query  727      TTACTTAGTCAGTGACGATTTCCAATCCTACTTGCAAATGCAATCGATGGTCGATGACGT  786
                 || || || || ||||||||| | |||||| ||||||  |||||| |||||||||||||
Sbjct  8761801  CTATTTGGTGAGCGACGATTTCAAGTCCTACGTGCAAACCCAATCGTTGGTCGATGACGT  8761742

Query  787      CTACCACAACAACAAGAAGGAGTGGCTAAAGAAGTCCATTTTGAGTGTTGCCAACGTTGG  846
                ||||||||| ||||||||||| ||| | ||||| |||||  |||||||||||||||||||
Sbjct  8761741  CTACCACAAGAACAAGAAGGAATGGTTGAAGAAATCCATCCTGAGTGTTGCCAACGTTGG  8761682

Query  847      TTTCTTCTCCAGTGACCGTTGTATCCAGGA  876
                 |||||||||||||||||||||||||||||
Sbjct  8761681  ATTCTTCTCCAGTGACCGTTGTATCCAGGA  8761652


 Score = 37.4 bits (40),  Expect = 0.052
 Identities = 28/32 (88%), Gaps = 2/32 (6%)
 Strand=Plus/Minus

Query  1        GCAGCACAAC--AAGCAAAAGCTTGCCGATTT  30
                |||||||||   ||||||||||||||| ||||
Sbjct  3066422  GCAGCACAATTGAAGCAAAAGCTTGCCTATTT  3066391


 Score = 31.9 bits (34),  Expect = 2.2
 Identities = 23/27 (86%), Gaps = 0/27 (0%)
 Strand=Plus/Minus

Query  60      TCATCGAAAGAGACCACATCAGAAACA  86
               |||||  || ||||||||||| |||||
Sbjct  793237  TCATCCTAACAGACCACATCATAAACA  793211


 Score = 31.9 bits (34),  Expect = 2.2
 Identities = 20/22 (91%), Gaps = 0/22 (0%)
 Strand=Plus/Minus

Query  135      AGTTGAACATCTTTGGGTGCAT  156
                |||| ||||||||||||| |||
Sbjct  3564620  AGTTTAACATCTTTGGGTACAT  3564599


 Score = 31.9 bits (34),  Expect = 2.2
 Identities = 22/25 (88%), Gaps = 0/25 (0%)
 Strand=Plus/Plus

Query  27       ATTTGATCAAGAAGTTGTACGACGG  51
                ||||||||||||||   ||||||||
Sbjct  6479093  ATTTGATCAAGAAGCGATACGACGG  6479117


 Score = 31.9 bits (34),  Expect = 2.2
 Identities = 20/22 (91%), Gaps = 0/22 (0%)
 Strand=Plus/Plus

Query  3        AGCACAACAAGCAAAAGCTTGC  24
                || |||||||||||||||| ||
Sbjct  7448200  AGAACAACAAGCAAAAGCTAGC  7448221


 Score = 31.9 bits (34),  Expect = 2.2
 Identities = 20/22 (91%), Gaps = 0/22 (0%)
 Strand=Plus/Plus

Query  214      GGAAAAGAAGTACCCAAGAAAG  235
                |||||| || ||||||||||||
Sbjct  9063637  GGAAAAAAAATACCCAAGAAAG  9063658


 Score = 31.9 bits (34),  Expect = 2.2
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  214      GGAAAAGAAGTACCCAAGAA  233
                |||||||||||||||| |||
Sbjct  9807224  GGAAAAGAAGTACCCACGAA  9807205


 Score = 30.1 bits (32),  Expect = 7.7
 Identities = 21/24 (88%), Gaps = 0/24 (0%)
 Strand=Plus/Minus

Query  681      GTGACTTCAAGCCTTTGGTCGACT  704
                ||||| | ||| ||||||||||||
Sbjct  1173444  GTGACGTGAAGGCTTTGGTCGACT  1173421


 Score = 30.1 bits (32),  Expect = 7.7
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  54       AAGACATCATCGAAAG  69
                ||||||||||||||||
Sbjct  1941401  AAGACATCATCGAAAG  1941386


 Score = 30.1 bits (32),  Expect = 7.7
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  217      AAAGAAGTACCCAAGA  232
                ||||||||||||||||
Sbjct  2493059  AAAGAAGTACCCAAGA  2493044


 Score = 30.1 bits (32),  Expect = 7.7
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  650      TTGCAACTGATTGAGCGCGGC  670
                |||||| | ||||||||||||
Sbjct  3019717  TTGCAAGTCATTGAGCGCGGC  3019737


 Score = 30.1 bits (32),  Expect = 7.7
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  61       CATCGAAAGAGACCACATCAG  81
                |||||||||||| ||||| ||
Sbjct  3493157  CATCGAAAGAGAGCACATTAG  3493177


 Score = 30.1 bits (32),  Expect = 7.7
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  592      GTTGAGATACCAACACCAG  610
                ||||||||||||| |||||
Sbjct  3906811  GTTGAGATACCAAGACCAG  3906793


 Score = 30.1 bits (32),  Expect = 7.7
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  96       ACATCCAAGTGAAGCG  111
                ||||||||||||||||
Sbjct  3919835  ACATCCAAGTGAAGCG  3919820


 Score = 30.1 bits (32),  Expect = 7.7
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  685      CTTCAAGCCTTTGGTC  700
                ||||||||||||||||
Sbjct  5091671  CTTCAAGCCTTTGGTC  5091656


 Score = 30.1 bits (32),  Expect = 7.7
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Plus

Query  74       CACATCAGAAACACCT  89
                ||||||||||||||||
Sbjct  5853086  CACATCAGAAACACCT  5853101


 Score = 30.1 bits (32),  Expect = 7.7
 Identities = 22/26 (85%), Gaps = 0/26 (0%)
 Strand=Plus/Minus

Query  758      TTGCAAATGCAATCGATGGTCGATGA  783
                || |||||||||||  ||||||| ||
Sbjct  5868887  TTACAAATGCAATCTTTGGTCGAAGA  5868862


 Score = 30.1 bits (32),  Expect = 7.7
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  835      TGCCAACGTTGGTTTCTTCTC  855
                |||||  ||||||||||||||
Sbjct  6681935  TGCCACTGTTGGTTTCTTCTC  6681955


 Score = 30.1 bits (32),  Expect = 7.7
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  73       CCACATCAGAAACACCTTGTT  93
                ||||||||||||||  |||||
Sbjct  7414798  CCACATCAGAAACAGATTGTT  7414778


 Score = 30.1 bits (32),  Expect = 7.7
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  546      AGGACAACATCTTCTTGTTTG  566
                ||||| |||||||||||| ||
Sbjct  7630640  AGGACTACATCTTCTTGTCTG  7630660


 Score = 30.1 bits (32),  Expect = 7.7
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Plus

Query  789      ACCACAACAACAAGAAGGA  807
                |||||||||||||||| ||
Sbjct  7906940  ACCACAACAACAAGAATGA  7906958


 Score = 30.1 bits (32),  Expect = 7.7
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  189      CTGAAGGTGTCCCAATTGC  207
                ||||||| |||||||||||
Sbjct  9109725  CTGAAGGAGTCCCAATTGC  9109707


 Score = 30.1 bits (32),  Expect = 7.7
 Identities = 19/21 (91%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  784       CGTCTACCACAACAACAAGAA  804
                 ||||||| | |||||||||||
Sbjct  10415502  CGTCTACAAAAACAACAAGAA  10415482



Lambda     K      H
   0.634    0.408    0.912 

Gapped
Lambda     K      H
   0.625    0.410    0.780 

Effective search space used: 9130591200


  Database: Kluyveromyces dobzhanskii (Sep 2011)
    Posted date:  Sep 16, 2011  10:25 AM
  Number of letters in database: 10,741,898
  Number of sequences in database:  1



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2
Query
>query
GCAGCACAACAAGCAAAAGCTTGCCGATTTGATCAAGAAGTTGTACGACGGCGAAGACATCATCGAAAGAGACCACATCAGAAACACCTTGTTCGACATCCAAGTGAAGCGTATTCACGAGTACAAGCGTCAACAGTTGAACATCTTTGGGTGCATCTACAGATACTTGCGGATCAAGGAGTTGTTGGCTGAAGGTGTCCCAATTGCCGAAGTGGAAAAGAAGTACCCAAGAAAGGTGTCCATCTTTGGTGGTAAGAGTGCTCCAGGTTACTACATGGCCAAGACGATTATCAAGTTGATCAACAGTGTCAGCGACGTGGTGAACCACGACAAGGAGATCGGGAACATCTTCAAGGTCGTGTTCATTCCAGACTACAACGTCTCCAAGGCAGAAATCATCATTCCTGCCAGTGACTTGAGTGAGCACATCTCTACCGCCGGTACCGAGGCCTCTGGTACATCCAACATGAAGTTTGTCATGAACGGTGGGTTGATCATTGGTACCGTGGACGGTGCCAACGTCGAGATCACCAGAGAAATTGGAGAGGACAACATCTTCTTGTTTGGTAACTTGGCCGAGAACGTTGACGAGTTGAGATACCAACACCAGTACCACGCCAAGCCATTGCCAAAGGAGTTGGAGGAAGTGTTGCAACTGATTGAGCGCGGCACTTTCGACGGTGACTTCAAGCCTTTGGTCGACTCTATCAGACACCACGGTGACTATTACTTAGTCAGTGACGATTTCCAATCCTACTTGCAAATGCAATCGATGGTCGATGACGTCTACCACAACAACAAGAAGGAGTGGCTAAAGAAGTCCATTTTGAGTGTTGCCAACGTTGGTTTCTTCTCCAGTGACCGTTGTATCCAGGA
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Adhoc 12.7 SciLifeLab tools Per Kraulis (per.kraulis@scilifelab.se)