blastn task: [no title]

Status
finished finished
Modified 2013-11-24T07:52:49Z
CPU time (s) 0.0
Size (bytes) 5690
Command blastn -num_descriptions 500 -outfmt 0 -dust no -db Kluyveromyces_lactis_Y-1140.fna -num_alignments 250 -evalue 10.0 -task blastn
Error [none]
Output
BLASTN 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: Kluyveromyces lactis NRRL Y-1140
           7 sequences; 10,729,447 total letters



Query= query

Length=18
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  gi|50313007|ref|NC_006038.1| Kluyveromyces lactis NRRL Y-1140 c...  33.7    0.002
  gi|50313008|ref|NC_006039.1| Kluyveromyces lactis NRRL Y-1140 c...  28.3    0.095
  gi|50313011|ref|NC_006042.1| Kluyveromyces lactis NRRL Y-1140 c...  26.5    0.33 
  gi|50313006|ref|NC_006037.1| Kluyveromyces lactis NRRL Y-1140 c...  24.7    1.2  
  gi|50313009|ref|NC_006040.1| Kluyveromyces lactis NRRL Y-1140 c...  22.9    4.0  


> gi|50313007|ref|NC_006038.1| Kluyveromyces lactis NRRL Y-1140 
chromosome B, complete genome
Length=1320834

 Score = 33.7 bits (36),  Expect = 0.002
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  1        CAGGGCGGGTAACATGAC  18
                ||||||||||||||||||
Sbjct  1320057  CAGGGCGGGTAACATGAC  1320074


 Score = 24.7 bits (26),  Expect = 1.2
 Identities = 13/13 (100%), Gaps = 0/13 (0%)
 Strand=Plus/Minus

Query  6        CGGGTAACATGAC  18
                |||||||||||||
Sbjct  1272882  CGGGTAACATGAC  1272870


 Score = 22.9 bits (24),  Expect = 4.0
 Identities = 14/15 (94%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  2        AGGGCGGGTAACATG  16
                || ||||||||||||
Sbjct  1140398  AGTGCGGGTAACATG  1140412


 Score = 22.9 bits (24),  Expect = 4.0
 Identities = 12/12 (100%), Gaps = 0/12 (0%)
 Strand=Plus/Plus

Query  3        GGGCGGGTAACA  14
                ||||||||||||
Sbjct  1320166  GGGCGGGTAACA  1320177


> gi|50313008|ref|NC_006039.1| Kluyveromyces lactis NRRL Y-1140 
chromosome C, complete genome
Length=1753957

 Score = 28.3 bits (30),  Expect = 0.095
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  1       CAGGGCGGGTAACAT  15
               |||||||||||||||
Sbjct  720732  CAGGGCGGGTAACAT  720718


 Score = 24.7 bits (26),  Expect = 1.2
 Identities = 13/13 (100%), Gaps = 0/13 (0%)
 Strand=Plus/Plus

Query  2        AGGGCGGGTAACA  14
                |||||||||||||
Sbjct  1487634  AGGGCGGGTAACA  1487646


 Score = 22.9 bits (24),  Expect = 4.0
 Identities = 12/12 (100%), Gaps = 0/12 (0%)
 Strand=Plus/Minus

Query  4       GGCGGGTAACAT  15
               ||||||||||||
Sbjct  467442  GGCGGGTAACAT  467431


> gi|50313011|ref|NC_006042.1| Kluyveromyces lactis NRRL Y-1140 
chromosome F, complete genome
Length=2602197

 Score = 26.5 bits (28),  Expect = 0.33
 Identities = 14/14 (100%), Gaps = 0/14 (0%)
 Strand=Plus/Plus

Query  2        AGGGCGGGTAACAT  15
                ||||||||||||||
Sbjct  2582527  AGGGCGGGTAACAT  2582540


 Score = 24.7 bits (26),  Expect = 1.2
 Identities = 13/13 (100%), Gaps = 0/13 (0%)
 Strand=Plus/Minus

Query  2        AGGGCGGGTAACA  14
                |||||||||||||
Sbjct  2282356  AGGGCGGGTAACA  2282344


 Score = 22.9 bits (24),  Expect = 4.0
 Identities = 15/17 (89%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  2       AGGGCGGGTAACATGAC  18
               ||| | |||||||||||
Sbjct  876072  AGGTCTGGTAACATGAC  876056


> gi|50313006|ref|NC_006037.1| Kluyveromyces lactis NRRL Y-1140 
chromosome A, complete genome
Length=1062590

 Score = 24.7 bits (26),  Expect = 1.2
 Identities = 13/13 (100%), Gaps = 0/13 (0%)
 Strand=Plus/Minus

Query  4       GGCGGGTAACATG  16
               |||||||||||||
Sbjct  408517  GGCGGGTAACATG  408505


 Score = 22.9 bits (24),  Expect = 4.0
 Identities = 12/12 (100%), Gaps = 0/12 (0%)
 Strand=Plus/Minus

Query  6       CGGGTAACATGA  17
               ||||||||||||
Sbjct  232932  CGGGTAACATGA  232921


 Score = 22.9 bits (24),  Expect = 4.0
 Identities = 12/12 (100%), Gaps = 0/12 (0%)
 Strand=Plus/Minus

Query  6       CGGGTAACATGA  17
               ||||||||||||
Sbjct  856346  CGGGTAACATGA  856335


> gi|50313009|ref|NC_006040.1| Kluyveromyces lactis NRRL Y-1140 
chromosome D, complete genome
Length=1715506

 Score = 22.9 bits (24),  Expect = 4.0
 Identities = 12/12 (100%), Gaps = 0/12 (0%)
 Strand=Plus/Minus

Query  2       AGGGCGGGTAAC  13
               ||||||||||||
Sbjct  987677  AGGGCGGGTAAC  987666


 Score = 22.9 bits (24),  Expect = 4.0
 Identities = 14/15 (94%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  1        CAGGGCGGGTAACAT  15
                ||| |||||||||||
Sbjct  1528559  CAGAGCGGGTAACAT  1528545



Lambda     K      H
   0.634    0.408    0.912 

Gapped
Lambda     K      H
   0.625    0.410    0.780 

Effective search space used: 32188026


  Database: Kluyveromyces lactis NRRL Y-1140
    Posted date:  Aug 15, 2011  4:00 PM
  Number of letters in database: 10,729,447
  Number of sequences in database:  7



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2
Query
>query
CAGGGCGGGTAACATGAC
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Adhoc 12.7 SciLifeLab tools Per Kraulis (per.kraulis@scilifelab.se)