tblastn task: ter

Status
finished finished
Modified 2018-01-31T09:20:17Z
CPU time (s) 0.0
Size (bytes) 2554
Command tblastn -num_descriptions 500 -outfmt 0 -db_gencode 1 -db 'Kluyveromyces_wickerhamii_UCD_54_210.AEAV00000000_1.aug.ffn Kluyveromyces_lactis.ffn Kluyveromyces_lactis_Y-1140.fna' -num_alignments 250 -seg '12 2.2 2.5' -evalue 10.0
Error [none]
Output
TBLASTN 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: Kluyveromyces wickerhamii UCD 54 210 AEAV00000000_1 genes;
Kluyveromyces lactis; Kluyveromyces lactis NRRL Y-1140
           9,952 sequences; 25,258,914 total letters



Query= query

Length=600


***** No hits found *****



Lambda     K      H
   -1.00    -1.00    -1.00 

Gapped
Lambda     K      H
   -1.00    -1.00    -1.00 

Effective search space used: 0


  Database: Kluyveromyces wickerhamii UCD 54 210 AEAV00000000_1 genes
    Posted date:  Aug 30, 2011  10:10 AM
  Number of letters in database: 7,134,491
  Number of sequences in database:  4,869

  Database: Kluyveromyces lactis
    Posted date:  Aug 15, 2011  4:06 PM
  Number of letters in database: 7,394,976
  Number of sequences in database:  5,076

  Database: Kluyveromyces lactis NRRL Y-1140
    Posted date:  Aug 15, 2011  4:00 PM
  Number of letters in database: 10,729,447
  Number of sequences in database:  7



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
Query
>query
GAATATATGATGGGTGCGGAATCACGATCGGTATTTGTGTGATGCAATTTCTGGGGTGGTAAGGACCAGTGCCACACTTGGGTTTGATTTTCCTCTCATCGAGTTTCGTGTGCGCATGTTCGTCTCTCACATCGAGTTATACTCTCATCTTCTATACATTAGAAGGATGCATCAGCAGTTTGATCTGCTGAAAGAGTTCATACACCCAATTATTGTTTAAAGGCCTGGTGTTGGGTAGTATTTCTAACGGATTTTAGAAATGCTATGACAACAATACCTTTAGAATTATATTGTGTGGATATTTACTTCTTGTTAAACAGACTGTGACATATCTCAATGAGAGGGGATTATTCTCGTTTTTGGAGTTATTCTGATGCCTGTTGCTCTTGCTCCTACGCATAGAAGCATAGCATTGAACTCCATGGTGTGGTACTTCAAATCCGTACACCACATACCTAATCAAAACCGCCTCGCAACGGCTTCCATATTCTCGTCTGTATTCAATCGTGGATAGTGGTTTCAGCTCGACGTGGGTATGCTAGTGACTCAGAGTTTGGATGTACTAGGTTTCATAAGGATACCCAACTGGAAATGTTGCGG
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Adhoc 12.7 SciLifeLab tools Per Kraulis (per.kraulis@scilifelab.se)