blastn task: [no title]

Status
finished finished
Modified 2016-05-16T11:35:49Z
CPU time (s) 0.1
Size (bytes) 13665
Command blastn -num_descriptions 500 -outfmt 0 -dust no -db 'gsASS001Lm.aug.trna.KL.rRNA2.fna gsASS001Lm.aug.trna.KL.rRNA2.ffn' -num_alignments 250 -evalue 10.0 -task blastn
Error [none]
Output
BLASTN 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: Kluyveromyces dobzhanskii (Sep 2011); Kluyveromyces dobzhanskii
genes (Sep 2011)
           4,996 sequences; 18,101,928 total letters



Query= 
Length=864
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  gsASS001Lm                                                          1153    0.0  
  KLDOg3120                                                           1151    0.0  
  KLDOg4000                                                           31.9    3.6  
  KLDOg3495                                                           31.9    3.6  
  KLDOg2550                                                           31.9    3.6  
  KLDOg2220                                                           31.9    3.6  
  KLDOg1733                                                           31.9    3.6  
  KLDOg1643                                                           31.9    3.6  


> gsASS001Lm
Length=10741898

 Score = 1153 bits (1278),  Expect = 0.0
 Identities = 770/857 (90%), Gaps = 0/857 (0%)
 Strand=Plus/Minus

Query  6        TTACACTACCAGACAAATCGGTGCCAAGAACACCTTGGACTACAAAGTTTTCATCGAAAA  65
                ||||||  |||||||| | ||||| |||||||| ||||||||||  ||||||||||||||
Sbjct  6794805  TTACACAGCCAGACAAGTTGGTGCTAAGAACACTTTGGACTACAGGGTTTTCATCGAAAA  6794746

Query  66       GGATGGCAAGCCAGTGTCTGCCTTCCACGACATCCCATTGTACGCTGACGAAGCCAATGG  125
                |||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||| ||
Sbjct  6794745  GGATGGTAAGCCAGTTTCTGCTTTCCACGACATCCCATTGTACGCTGATGAGGCCAACGG  6794686

Query  126      TATCTTCAACATGGTTGTCGAAATCCCACGTTGGACCAACGCCAAGTTGGAAATCACCAA  185
                 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct  6794685  GATCTTCAACATGGTCGTTGAAATCCCACGTTGGACCAACGCCAAGTTGGAAATCACCAA  6794626

Query  186      GGAGGAGAAGTTGAACCCAATCATCCAAGACACCAAGAAGGGTAAGCTAAGATTTGTGAG  245
                ||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct  6794625  GGAGGAGAAATTGAACCCAATTATCCAGGACACCAAGAAGGGTAAGCTAAGATTTGTGAG  6794566

Query  246      AAACTGTTTCCCACACCACGGTTACATCCACAACTACGGTGCCTTCCCACAAACCTGGGA  305
                |||||||||||||||||| |||||||| |||||||||||||| ||||| || ||||||||
Sbjct  6794565  AAACTGTTTCCCACACCATGGTTACATTCACAACTACGGTGCTTTCCCTCAGACCTGGGA  6794506

Query  306      AGATCCTAACGAGTCCCACCCAGAAACCAAGGCTGTTGGTGACAACGATCCATTGGATGT  365
                ||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  6794505  AGACCCTAACGAGGCTCACCCAGAAACCAAGGCTGTTGGTGACAACGATCCATTGGACGT  6794446

Query  366      GTTGGAAATCGGTGAACAAGTCGCATACACTGGTCAAGTGAAGCAAGTCAAGGTTCTTGG  425
                ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  6794445  GTTGGAAATCGGTGAGCAAGTTGCATACACTGGTCAAGTGAAGCAAGTCAAGGTTCTTGG  6794386

Query  426      TGTGATGGCCTTGTTGGACGAAGGTGAGACCGACTGGAAGGTGATTGTGATCGACATCAA  485
                ||||||||| |||||||||||||| ||||||||||||||||||||||  |||||||||||
Sbjct  6794385  TGTGATGGCTTTGTTGGACGAAGGGGAGACCGACTGGAAGGTGATTGCCATCGACATCAA  6794326

Query  486      CGATCCATTGGCCCCAAAGTTGAACGACATTGAGGATGTCGAGAAGCACTTGCCAGGTTT  545
                ||| |||||||| || |||||||||||||| || |||||||| |||||| ||||||||||
Sbjct  6794325  CGACCCATTGGCTCCTAAGTTGAACGACATCGAAGATGTCGAAAAGCACCTGCCAGGTTT  6794266

Query  546      GCTAAGAGCCACTAACGAATGGTTCAGAATCTACAAGATTCCAGACGGTAAGCCAGAAAA  605
                | | |||||||| |||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct  6794265  GTTGAGAGCCACCAACGAATGGTTCAGAATCTACAAGATCCCTGACGGTAAGCCAGAGAA  6794206

Query  606      CCAATTTGCCTTCTCTGGTGAAGCCAAGAACAAGAAGTACGCTCTAGAAGTGATCAGGGA  665
                 |||||||| ||||| ||||| |||||||||||||||||| || | ||||| ||||| ||
Sbjct  6794205  TCAATTTGCTTTCTCCGGTGAGGCCAAGAACAAGAAGTACACTTTGGAAGTCATCAGAGA  6794146

Query  666      GTGTAACGAAGCTTGGAAGAAGTTGATTTCCGGTAAGTCTGCTGACGCTAAGAAGATCGA  725
                |   |||||||| |||||||||||||| ||||| ||| || | ||||| |||||||||||
Sbjct  6794145  GACCAACGAAGCCTGGAAGAAGTTGATCTCCGGCAAGGCTTCCGACGCCAAGAAGATCGA  6794086

Query  726      TTTGACCAACACCACGTTGGTCGACACTGCCACTTACTCTGCCGAGGCAGCTGCTGCTGT  785
                ||||||||||||||| |||| ||| ||  | ||||||||||| || || ||  |||||||
Sbjct  6794085  TTTGACCAACACCACTTTGGCCGAGACCCCAACTTACTCTGCTGAAGCTGCCTCTGCTGT  6794026

Query  786      TCCACCAGCACACGTCTTGCCAGACGAGCCAATCGACAAGTCCATTGACAAGTGGTTCTT  845
                |||| | ||  ||||||||||||||||  |||||||||||||||| ||||||||||||||
Sbjct  6794025  TCCAGCTGCTAACGTCTTGCCAGACGAAGCAATCGACAAGTCCATCGACAAGTGGTTCTT  6793966

Query  846      CATCTCCGGTTCTGCTT  862
                |||||| ||||| ||||
Sbjct  6793965  CATCTCTGGTTCCGCTT  6793949


 Score = 31.9 bits (34),  Expect = 3.6
 Identities = 23/27 (86%), Gaps = 0/27 (0%)
 Strand=Plus/Plus

Query  124      GGTATCTTCAACATGGTTGTCGAAATC  150
                ||||||||| |||   |||||||||||
Sbjct  3560976  GGTATCTTCGACACCTTTGTCGAAATC  3561002


 Score = 31.9 bits (34),  Expect = 3.6
 Identities = 20/22 (91%), Gaps = 0/22 (0%)
 Strand=Plus/Minus

Query  621      TGGTGAAGCCAAGAACAAGAAG  642
                || ||||||||||||||| |||
Sbjct  3799948  TGCTGAAGCCAAGAACAAAAAG  3799927


 Score = 31.9 bits (34),  Expect = 3.6
 Identities = 22/25 (88%), Gaps = 0/25 (0%)
 Strand=Plus/Minus

Query  76       CCAGTGTCTGCCTTCCACGACATCC  100
                ||||||||||| | |||||||| ||
Sbjct  4840621  CCAGTGTCTGCGTCCCACGACAACC  4840597


 Score = 31.9 bits (34),  Expect = 3.6
 Identities = 22/25 (88%), Gaps = 0/25 (0%)
 Strand=Plus/Plus

Query  495      GGCCCCAAAGTTGAACGACATTGAG  519
                |||| ||||||  ||||||||||||
Sbjct  5581195  GGCCACAAAGTCTAACGACATTGAG  5581219


 Score = 31.9 bits (34),  Expect = 3.6
 Identities = 20/22 (91%), Gaps = 0/22 (0%)
 Strand=Plus/Minus

Query  342      TGGTGACAACGATCCATTGGAT  363
                ||| |||||||||||||| |||
Sbjct  7623810  TGGAGACAACGATCCATTCGAT  7623789


 Score = 31.9 bits (34),  Expect = 3.6
 Identities = 26/32 (82%), Gaps = 0/32 (0%)
 Strand=Plus/Plus

Query  597      GCCAGAAAACCAATTTGCCTTCTCTGGTGAAG  628
                || ||||||||||||| ||| |   |||||||
Sbjct  8729482  GCGAGAAAACCAATTTCCCTGCAGAGGTGAAG  8729513


> KLDOg3120
Length=861

 Score = 1151 bits (1276),  Expect = 0.0
 Identities = 769/856 (90%), Gaps = 0/856 (0%)
 Strand=Plus/Plus

Query  6    TTACACTACCAGACAAATCGGTGCCAAGAACACCTTGGACTACAAAGTTTTCATCGAAAA  65
            ||||||  |||||||| | ||||| |||||||| ||||||||||  ||||||||||||||
Sbjct  6    TTACACAGCCAGACAAGTTGGTGCTAAGAACACTTTGGACTACAGGGTTTTCATCGAAAA  65

Query  66   GGATGGCAAGCCAGTGTCTGCCTTCCACGACATCCCATTGTACGCTGACGAAGCCAATGG  125
            |||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||| ||
Sbjct  66   GGATGGTAAGCCAGTTTCTGCTTTCCACGACATCCCATTGTACGCTGATGAGGCCAACGG  125

Query  126  TATCTTCAACATGGTTGTCGAAATCCCACGTTGGACCAACGCCAAGTTGGAAATCACCAA  185
             |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct  126  GATCTTCAACATGGTCGTTGAAATCCCACGTTGGACCAACGCCAAGTTGGAAATCACCAA  185

Query  186  GGAGGAGAAGTTGAACCCAATCATCCAAGACACCAAGAAGGGTAAGCTAAGATTTGTGAG  245
            ||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct  186  GGAGGAGAAATTGAACCCAATTATCCAGGACACCAAGAAGGGTAAGCTAAGATTTGTGAG  245

Query  246  AAACTGTTTCCCACACCACGGTTACATCCACAACTACGGTGCCTTCCCACAAACCTGGGA  305
            |||||||||||||||||| |||||||| |||||||||||||| ||||| || ||||||||
Sbjct  246  AAACTGTTTCCCACACCATGGTTACATTCACAACTACGGTGCTTTCCCTCAGACCTGGGA  305

Query  306  AGATCCTAACGAGTCCCACCCAGAAACCAAGGCTGTTGGTGACAACGATCCATTGGATGT  365
            ||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  306  AGACCCTAACGAGGCTCACCCAGAAACCAAGGCTGTTGGTGACAACGATCCATTGGACGT  365

Query  366  GTTGGAAATCGGTGAACAAGTCGCATACACTGGTCAAGTGAAGCAAGTCAAGGTTCTTGG  425
            ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  366  GTTGGAAATCGGTGAGCAAGTTGCATACACTGGTCAAGTGAAGCAAGTCAAGGTTCTTGG  425

Query  426  TGTGATGGCCTTGTTGGACGAAGGTGAGACCGACTGGAAGGTGATTGTGATCGACATCAA  485
            ||||||||| |||||||||||||| ||||||||||||||||||||||  |||||||||||
Sbjct  426  TGTGATGGCTTTGTTGGACGAAGGGGAGACCGACTGGAAGGTGATTGCCATCGACATCAA  485

Query  486  CGATCCATTGGCCCCAAAGTTGAACGACATTGAGGATGTCGAGAAGCACTTGCCAGGTTT  545
            ||| |||||||| || |||||||||||||| || |||||||| |||||| ||||||||||
Sbjct  486  CGACCCATTGGCTCCTAAGTTGAACGACATCGAAGATGTCGAAAAGCACCTGCCAGGTTT  545

Query  546  GCTAAGAGCCACTAACGAATGGTTCAGAATCTACAAGATTCCAGACGGTAAGCCAGAAAA  605
            | | |||||||| |||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct  546  GTTGAGAGCCACCAACGAATGGTTCAGAATCTACAAGATCCCTGACGGTAAGCCAGAGAA  605

Query  606  CCAATTTGCCTTCTCTGGTGAAGCCAAGAACAAGAAGTACGCTCTAGAAGTGATCAGGGA  665
             |||||||| ||||| ||||| |||||||||||||||||| || | ||||| ||||| ||
Sbjct  606  TCAATTTGCTTTCTCCGGTGAGGCCAAGAACAAGAAGTACACTTTGGAAGTCATCAGAGA  665

Query  666  GTGTAACGAAGCTTGGAAGAAGTTGATTTCCGGTAAGTCTGCTGACGCTAAGAAGATCGA  725
            |   |||||||| |||||||||||||| ||||| ||| || | ||||| |||||||||||
Sbjct  666  GACCAACGAAGCCTGGAAGAAGTTGATCTCCGGCAAGGCTTCCGACGCCAAGAAGATCGA  725

Query  726  TTTGACCAACACCACGTTGGTCGACACTGCCACTTACTCTGCCGAGGCAGCTGCTGCTGT  785
            ||||||||||||||| |||| ||| ||  | ||||||||||| || || ||  |||||||
Sbjct  726  TTTGACCAACACCACTTTGGCCGAGACCCCAACTTACTCTGCTGAAGCTGCCTCTGCTGT  785

Query  786  TCCACCAGCACACGTCTTGCCAGACGAGCCAATCGACAAGTCCATTGACAAGTGGTTCTT  845
            |||| | ||  ||||||||||||||||  |||||||||||||||| ||||||||||||||
Sbjct  786  TCCAGCTGCTAACGTCTTGCCAGACGAAGCAATCGACAAGTCCATCGACAAGTGGTTCTT  845

Query  846  CATCTCCGGTTCTGCT  861
            |||||| ||||| |||
Sbjct  846  CATCTCTGGTTCCGCT  861


> KLDOg4000
Length=1581

 Score = 31.9 bits (34),  Expect = 3.6
 Identities = 26/32 (82%), Gaps = 0/32 (0%)
 Strand=Plus/Minus

Query  597  GCCAGAAAACCAATTTGCCTTCTCTGGTGAAG  628
            || ||||||||||||| ||| |   |||||||
Sbjct  376  GCGAGAAAACCAATTTCCCTGCAGAGGTGAAG  345


> KLDOg3495
Length=1200

 Score = 31.9 bits (34),  Expect = 3.6
 Identities = 20/22 (91%), Gaps = 0/22 (0%)
 Strand=Plus/Plus

Query  342  TGGTGACAACGATCCATTGGAT  363
            ||| |||||||||||||| |||
Sbjct  222  TGGAGACAACGATCCATTCGAT  243


> KLDOg2550
Length=1203

 Score = 31.9 bits (34),  Expect = 3.6
 Identities = 22/25 (88%), Gaps = 0/25 (0%)
 Strand=Plus/Plus

Query  495  GGCCCCAAAGTTGAACGACATTGAG  519
            |||| ||||||  ||||||||||||
Sbjct  494  GGCCACAAAGTCTAACGACATTGAG  518


> KLDOg2220
Length=1032

 Score = 31.9 bits (34),  Expect = 3.6
 Identities = 22/25 (88%), Gaps = 0/25 (0%)
 Strand=Plus/Minus

Query  76   CCAGTGTCTGCCTTCCACGACATCC  100
            ||||||||||| | |||||||| ||
Sbjct  281  CCAGTGTCTGCGTCCCACGACAACC  257


> KLDOg1733
Length=1923

 Score = 31.9 bits (34),  Expect = 3.6
 Identities = 20/22 (91%), Gaps = 0/22 (0%)
 Strand=Plus/Plus

Query  621  TGGTGAAGCCAAGAACAAGAAG  642
            || ||||||||||||||| |||
Sbjct  39   TGCTGAAGCCAAGAACAAAAAG  60


> KLDOg1643
Length=3600

 Score = 31.9 bits (34),  Expect = 3.6
 Identities = 23/27 (86%), Gaps = 0/27 (0%)
 Strand=Plus/Minus

Query  124  GGTATCTTCAACATGGTTGTCGAAATC  150
            ||||||||| |||   |||||||||||
Sbjct  513  GGTATCTTCGACACCTTTGTCGAAATC  487



Lambda     K      H
   0.634    0.408    0.912 

Gapped
Lambda     K      H
   0.625    0.410    0.780 

Effective search space used: 15060562816


  Database: Kluyveromyces dobzhanskii (Sep 2011)
    Posted date:  Sep 16, 2011  10:25 AM
  Number of letters in database: 10,741,898
  Number of sequences in database:  1

  Database: Kluyveromyces dobzhanskii genes (Sep 2011)
    Posted date:  Sep 16, 2011  10:26 AM
  Number of letters in database: 7,360,030
  Number of sequences in database:  4,995



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2
Query
>
ATGTCTTACACTACCAGACAAATCGGTGCCAAGAACACCTTGGACTACAAAGTTTTCATCGAAAAGGATGGCAAGCCAGTGTCTGCCTTCCACGACATCCCATTGTACGCTGACGAAGCCAATGGTATCTTCAACATGGTTGTCGAAATCCCACGTTGGACCAACGCCAAGTTGGAAATCACCAAGGAGGAGAAGTTGAACCCAATCATCCAAGACACCAAGAAGGGTAAGCTAAGATTTGTGAGAAACTGTTTCCCACACCACGGTTACATCCACAACTACGGTGCCTTCCCACAAACCTGGGAAGATCCTAACGAGTCCCACCCAGAAACCAAGGCTGTTGGTGACAACGATCCATTGGATGTGTTGGAAATCGGTGAACAAGTCGCATACACTGGTCAAGTGAAGCAAGTCAAGGTTCTTGGTGTGATGGCCTTGTTGGACGAAGGTGAGACCGACTGGAAGGTGATTGTGATCGACATCAACGATCCATTGGCCCCAAAGTTGAACGACATTGAGGATGTCGAGAAGCACTTGCCAGGTTTGCTAAGAGCCACTAACGAATGGTTCAGAATCTACAAGATTCCAGACGGTAAGCCAGAAAACCAATTTGCCTTCTCTGGTGAAGCCAAGAACAAGAAGTACGCTCTAGAAGTGATCAGGGAGTGTAACGAAGCTTGGAAGAAGTTGATTTCCGGTAAGTCTGCTGACGCTAAGAAGATCGATTTGACCAACACCACGTTGGTCGACACTGCCACTTACTCTGCCGAGGCAGCTGCTGCTGTTCCACCAGCACACGTCTTGCCAGACGAGCCAATCGACAAGTCCATTGACAAGTGGTTCTTCATCTCCGGTTCTGCTTGA
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Adhoc 12.7 SciLifeLab tools Per Kraulis (per.kraulis@scilifelab.se)